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The map label for this gene is nolR [H]

Identifier: 150397509

GI number: 150397509

Start: 2388843

End: 2389187

Strand: Direct

Name: nolR [H]

Synonym: Smed_2309

Alternate gene names: 150397509

Gene position: 2388843-2389187 (Clockwise)

Preceding gene: 150397508

Following gene: 150397510

Centisome position: 63.17

GC content: 54.2

Gene sequence:

>345_bases
ATGCAGCCTCTTCCGCCTGAAAAACACGAGGAAGCCGAAATAGCGGCCGGCTTCCTTTCGGCCATGGCAAATCCGAAACG
CCTGCTCATCCTCGACTCTCTCGTCAAGGAGGAAATGGCGGTTGGTACCTTGGCCAATAAGGTCGGGCTGAGCCAGTCGG
CACTTTCTCAACACCTTTCGAAGCTTCGTGCCCAGAATCTGGTCAGTACCCGTCGCGACGCACAGACGATCTATTATTCG
AGCTCTTCCGACGCCGTTTTGAAGATCCTGGGCGCACTATCCGAAATCTACGGCGAACAAACCAATGCCGTGGAAGAAAA
GCCTCTCATTCGCAAATCGGCGTAA

Upstream 100 bases:

>100_bases
CATTTCTTGCAGTGGGTGGTTGCCCTTTTATGCATCACGGCTAATGATCGTGCTTCGTCAATCATAAGTACGTGTGATGA
ATTTTCGCATGGAGCACACG

Downstream 100 bases:

>100_bases
TCTCCCAAGACCTCCGTCGACCGGCAGCAATGCCTGATTGAGCCCCGCCGATTCGATGGCGGGGCTTTGTTTTCTGCTGT
GTTGGGGGCGCTATGAACGA

Product: regulatory protein ArsR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MQPLPPEKHEEAEIAAGFLSAMANPKRLLILDSLVKEEMAVGTLANKVGLSQSALSQHLSKLRAQNLVSTRRDAQTIYYS
SSSDAVLKILGALSEIYGEQTNAVEEKPLIRKSA

Sequences:

>Translated_114_residues
MQPLPPEKHEEAEIAAGFLSAMANPKRLLILDSLVKEEMAVGTLANKVGLSQSALSQHLSKLRAQNLVSTRRDAQTIYYS
SSSDAVLKILGALSEIYGEQTNAVEEKPLIRKSA
>Mature_114_residues
MQPLPPEKHEEAEIAAGFLSAMANPKRLLILDSLVKEEMAVGTLANKVGLSQSALSQHLSKLRAQNLVSTRRDAQTIYYS
SSSDAVLKILGALSEIYGEQTNAVEEKPLIRKSA

Specific function: Negative transacting factor controlling the nod regulon. May control the expression of nodD1, nodD2, nodD3 and nodABC genes [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=87, Percent_Identity=45.9770114942529, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 12377; Mature: 12377

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPLPPEKHEEAEIAAGFLSAMANPKRLLILDSLVKEEMAVGTLANKVGLSQSALSQHLS
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KLRAQNLVSTRRDAQTIYYSSSSDAVLKILGALSEIYGEQTNAVEEKPLIRKSA
HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MQPLPPEKHEEAEIAAGFLSAMANPKRLLILDSLVKEEMAVGTLANKVGLSQSALSQHLS
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
KLRAQNLVSTRRDAQTIYYSSSSDAVLKILGALSEIYGEQTNAVEEKPLIRKSA
HHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1840615 [H]