| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397504
Identifier: 150397504
GI number: 150397504
Start: 2383541
End: 2384629
Strand: Reverse
Name: 150397504
Synonym: Smed_2304
Alternate gene names: NA
Gene position: 2384629-2383541 (Counterclockwise)
Preceding gene: 150397511
Following gene: 150397503
Centisome position: 63.05
GC content: 58.31
Gene sequence:
>1089_bases ATGGCGACGCTTCAGAATTTTGACGCCGAGATCGATAAGACCAGGAATGTCGTCAAGGACATGCGCAGCAAGCTCGAGCA GTCCGGCGTCGTGCTCGATCAATTCGCCAAGGCGGAGACCAAGCTCGGCGATGTCAATTTCGATATCGAGAACGCCCGCA TCCAGGACGTCGTCAACCAGCAGAAGGTGATGGAAGCCAACATCGCCGACCTGATCATCGGACTGGAAGATGCGACCAAT GTCTTCGGTGCCGAGTTCGAGAGCATGAAGAGCTATACCGGCTACGAAAAGTTCATCGGCATCTTCTCCAAGCAGAAGAT GCAGCGTTTGCGAACCGATCGCGTGCGCAACATGTCGCTTGCCGGCAACCTTCAGGAGCTGCTTTCGAAATCGGACACCA TCGTCGGCATCCTCAAGGACCAGAGAGCGATCCTCGACCAGCGCTACAAGACCTCCGAACAGAGCCTCATCCAGGTGATC GAGCGTCGCAAGGGCACGATGGCGTCGCTGGAGCAGACTCAGAAGCGGATCGAGGAACTGAACCCGCTGCTGCTCGACAT AGAGAACAGGATCGCAGCCTCGACCGACCAGAAGACCCGCACCGACCTCGAAGGCGAGCGCTCGCAGCTTGCGACCGAAT ACAACGAAAAGCAGGCGAAGGAGCAAGAACTTCTGGCCGAGAGCCAGACGCTGGAGCGCTACACGGCCATGTTCCAGACC TTCGTCGATTCGCTCAACAACCAGATCGCCGCCCAGAACACGCTGATCAACAAGCTGACGATCGACACCGAACAGCGCAT CGTACTTTACAAGGCGCTGGAGGATTCGCTGAAAACGGCTGCGCAGCAGGATGTGGCGCACAAGATCAACACGCTCGGCA GTCAGGTCGACACTGCCGCCGAGGAGACCATGGCGGGGATCGGAGCGGCCGCGCAGCGCCACATCGGCGACTTGCTGGAG ATGCATGAAAAGAACATGCTTGCGACGCAGGATATCCAGCGGCGCAAGAAACTCGCCGACGACGCCTTCGCGCGCCGCTT CCAGACGGTGATGGACAAGCACAACGCCGCAAATTACGTGAAGCAGTGA
Upstream 100 bases:
>100_bases CCGGCCACCGCCCTTGTCGTTCCGTGCTAAACATCCTTTATATGAGTGCAATCAAGGGCTGAAACAGTCGGCTTTCACTG CTGGCTTAGGGGAGAAGGCA
Downstream 100 bases:
>100_bases TCGGCAAGGCGGCGATGACCCGATTTCCGACCGGCTTTCGGCCTTTGCCGGGAGAGTTGCCATGAATACCGCCATTTCTC CGGCCGTCAGGCAATATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MATLQNFDAEIDKTRNVVKDMRSKLEQSGVVLDQFAKAETKLGDVNFDIENARIQDVVNQQKVMEANIADLIIGLEDATN VFGAEFESMKSYTGYEKFIGIFSKQKMQRLRTDRVRNMSLAGNLQELLSKSDTIVGILKDQRAILDQRYKTSEQSLIQVI ERRKGTMASLEQTQKRIEELNPLLLDIENRIAASTDQKTRTDLEGERSQLATEYNEKQAKEQELLAESQTLERYTAMFQT FVDSLNNQIAAQNTLINKLTIDTEQRIVLYKALEDSLKTAAQQDVAHKINTLGSQVDTAAEETMAGIGAAAQRHIGDLLE MHEKNMLATQDIQRRKKLADDAFARRFQTVMDKHNAANYVKQ
Sequences:
>Translated_362_residues MATLQNFDAEIDKTRNVVKDMRSKLEQSGVVLDQFAKAETKLGDVNFDIENARIQDVVNQQKVMEANIADLIIGLEDATN VFGAEFESMKSYTGYEKFIGIFSKQKMQRLRTDRVRNMSLAGNLQELLSKSDTIVGILKDQRAILDQRYKTSEQSLIQVI ERRKGTMASLEQTQKRIEELNPLLLDIENRIAASTDQKTRTDLEGERSQLATEYNEKQAKEQELLAESQTLERYTAMFQT FVDSLNNQIAAQNTLINKLTIDTEQRIVLYKALEDSLKTAAQQDVAHKINTLGSQVDTAAEETMAGIGAAAQRHIGDLLE MHEKNMLATQDIQRRKKLADDAFARRFQTVMDKHNAANYVKQ >Mature_361_residues ATLQNFDAEIDKTRNVVKDMRSKLEQSGVVLDQFAKAETKLGDVNFDIENARIQDVVNQQKVMEANIADLIIGLEDATNV FGAEFESMKSYTGYEKFIGIFSKQKMQRLRTDRVRNMSLAGNLQELLSKSDTIVGILKDQRAILDQRYKTSEQSLIQVIE RRKGTMASLEQTQKRIEELNPLLLDIENRIAASTDQKTRTDLEGERSQLATEYNEKQAKEQELLAESQTLERYTAMFQTF VDSLNNQIAAQNTLINKLTIDTEQRIVLYKALEDSLKTAAQQDVAHKINTLGSQVDTAAEETMAGIGAAAQRHIGDLLEM HEKNMLATQDIQRRKKLADDAFARRFQTVMDKHNAANYVKQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41072; Mature: 40941
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATLQNFDAEIDKTRNVVKDMRSKLEQSGVVLDQFAKAETKLGDVNFDIENARIQDVVNQ CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH QKVMEANIADLIIGLEDATNVFGAEFESMKSYTGYEKFIGIFSKQKMQRLRTDRVRNMSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH AGNLQELLSKSDTIVGILKDQRAILDQRYKTSEQSLIQVIERRKGTMASLEQTQKRIEEL HCCHHHHHCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH NPLLLDIENRIAASTDQKTRTDLEGERSQLATEYNEKQAKEQELLAESQTLERYTAMFQT CHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVDSLNNQIAAQNTLINKLTIDTEQRIVLYKALEDSLKTAAQQDVAHKINTLGSQVDTAA HHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EETMAGIGAAAQRHIGDLLEMHEKNMLATQDIQRRKKLADDAFARRFQTVMDKHNAANYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KQ CC >Mature Secondary Structure ATLQNFDAEIDKTRNVVKDMRSKLEQSGVVLDQFAKAETKLGDVNFDIENARIQDVVNQ CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH QKVMEANIADLIIGLEDATNVFGAEFESMKSYTGYEKFIGIFSKQKMQRLRTDRVRNMSL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH AGNLQELLSKSDTIVGILKDQRAILDQRYKTSEQSLIQVIERRKGTMASLEQTQKRIEEL HCCHHHHHCCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH NPLLLDIENRIAASTDQKTRTDLEGERSQLATEYNEKQAKEQELLAESQTLERYTAMFQT CHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVDSLNNQIAAQNTLINKLTIDTEQRIVLYKALEDSLKTAAQQDVAHKINTLGSQVDTAA HHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EETMAGIGAAAQRHIGDLLEMHEKNMLATQDIQRRKKLADDAFARRFQTVMDKHNAANYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KQ CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA