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The map label for this gene is cspG [C]

Identifier: 150397438

GI number: 150397438

Start: 2318728

End: 2318943

Strand: Direct

Name: cspG [C]

Synonym: Smed_2238

Alternate gene names: 150397438

Gene position: 2318728-2318943 (Clockwise)

Preceding gene: 150397437

Following gene: 150397439

Centisome position: 61.31

GC content: 56.02

Gene sequence:

>216_bases
ATGGCCGAGACTGGCACTGTAAAATTCTTCAATACCGATAAGGGCTTTGGTTTCATCAAGCCTGAGAACGGTGGCGCGGA
CATCTTCGTACATATTTCTGCCGTGCAGGCTTCCGGCCTGAGCGGTCTGACGGAGAACCAGAAAGTCTCCTTCGACACCG
AGCCGGATCGCCGCGGCAAAGGACCGAAGGCGGTCAACCTGCAGATCGTCGGCTAA

Upstream 100 bases:

>100_bases
CCAGGACCCTTTCCTCAATTGTCGAGAACTGCCCCCACGCCCAAACTGGGCAAAACTGCAATGCTGCCCGCAAATCGGGT
GAGTGAAAAGGACCTGACGC

Downstream 100 bases:

>100_bases
CGCCGTCTCTGCATCAAAACTTACGCTCGAGCCCGGCATTTTTGCCGGGTTTTTTCGTTCAGGCTCCATTCAGTTTGGCG
TATATAGACTTTGTTCATCA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MAETGTVKFFNTDKGFGFIKPENGGADIFVHISAVQASGLSGLTENQKVSFDTEPDRRGKGPKAVNLQIVG

Sequences:

>Translated_71_residues
MAETGTVKFFNTDKGFGFIKPENGGADIFVHISAVQASGLSGLTENQKVSFDTEPDRRGKGPKAVNLQIVG
>Mature_70_residues
AETGTVKFFNTDKGFGFIKPENGGADIFVHISAVQASGLSGLTENQKVSFDTEPDRRGKGPKAVNLQIVG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=53.125, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=56.25, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=53.125, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=53.030303030303, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=52.3809523809524, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=48.4848484848485, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI1787107, Length=68, Percent_Identity=47.0588235294118, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7527; Mature: 7395

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETGTVKFFNTDKGFGFIKPENGGADIFVHISAVQASGLSGLTENQKVSFDTEPDRRGK
CCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCC
GPKAVNLQIVG
CCCEEEEEEEC
>Mature Secondary Structure 
AETGTVKFFNTDKGFGFIKPENGGADIFVHISAVQASGLSGLTENQKVSFDTEPDRRGK
CCCCEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCC
GPKAVNLQIVG
CCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]