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The map label for this gene is yjdC [C]

Identifier: 150397405

GI number: 150397405

Start: 2285391

End: 2285999

Strand: Reverse

Name: yjdC [C]

Synonym: Smed_2205

Alternate gene names: 150397405

Gene position: 2285999-2285391 (Counterclockwise)

Preceding gene: 150397407

Following gene: 150397404

Centisome position: 60.45

GC content: 61.08

Gene sequence:

>609_bases
ATGGCGGCGACACAAAACACACGCGAACGTATCGTTTCCGCCGCTGCCAGGCTGTTCTATGCGGAAGGAATTCGCGCCGT
CAGCGTGGACGCCGTTGCCGAGGCGGCCGGCTTGACGAAGCGCACTCTCTACTATCATTTCAAGAGCAAGGACGAGTTGA
TTGCCGCCTATCTTGAGGAGCGTGACCAGCCCAACCTCAAGCTCTTCCAGAAGTGGTTCAGCGAAACCGACGGTGATGCG
GCGTCAAAGATCAAAGCCATTTTTCTCAATCTCGCCCGGGCTGCCCGGCACCCGAAATGGAAGGGCTGCGGTTTCCTCCG
CACTTCGGCGGAACTCGCCAATATGCCCGGCCACCCGGCGATCCGCATAGCGGCAGCGCACAAAAGGAAGTTCGAGGACT
GGCTGCGTCAGAGCTTCGAGACGGAAGGAATTGCAGAGGCGGCCAGGCTCGCGCGGCAGATGCTGCTGCTCCTCGACGGC
AGCTTCGCGGTCGTTTTGCTCCACCGTGATCCGAGCTATATGGAGACGGCGGGCGAGGCCGCGGCTACGCTCGTAAAGCT
GGCGCTTTCGGAACCGAGTGTGCAGCAACCAGCCGGGAGGGGCAAATGA

Upstream 100 bases:

>100_bases
AGCACAGTATCGGACATGTTTGTCTCCCGTCGGGTGTTGACGAACGGAGGCTAAGTGGGAGACAAAGGAATGTATATTCA
CTAGTCGGTATACCTGGATT

Downstream 100 bases:

>100_bases
AAGTCCGACGCATCATGCCTAATTTTCAGGTATCCGATCTGCTCGAGGCAGATCGCTTCTACAGGGCCCTGCTCGGCCTG
GAGATCGTGATGAATCACGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; TetR Family Regulatory Protein; Transcriptional Regulatory Protein; Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator Tetr Family; Transcription Regulator Protein; Transcription Regulator; TetR-Family Protein Transcriptional Regulator; Tetr Family Transcriptional Regulator; Transcriptional Regulator Tetr-Like Protein

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAATQNTRERIVSAAARLFYAEGIRAVSVDAVAEAAGLTKRTLYYHFKSKDELIAAYLEERDQPNLKLFQKWFSETDGDA
ASKIKAIFLNLARAARHPKWKGCGFLRTSAELANMPGHPAIRIAAAHKRKFEDWLRQSFETEGIAEAARLARQMLLLLDG
SFAVVLLHRDPSYMETAGEAAATLVKLALSEPSVQQPAGRGK

Sequences:

>Translated_202_residues
MAATQNTRERIVSAAARLFYAEGIRAVSVDAVAEAAGLTKRTLYYHFKSKDELIAAYLEERDQPNLKLFQKWFSETDGDA
ASKIKAIFLNLARAARHPKWKGCGFLRTSAELANMPGHPAIRIAAAHKRKFEDWLRQSFETEGIAEAARLARQMLLLLDG
SFAVVLLHRDPSYMETAGEAAATLVKLALSEPSVQQPAGRGK
>Mature_201_residues
AATQNTRERIVSAAARLFYAEGIRAVSVDAVAEAAGLTKRTLYYHFKSKDELIAAYLEERDQPNLKLFQKWFSETDGDAA
SKIKAIFLNLARAARHPKWKGCGFLRTSAELANMPGHPAIRIAAAHKRKFEDWLRQSFETEGIAEAARLARQMLLLLDGS
FAVVLLHRDPSYMETAGEAAATLVKLALSEPSVQQPAGRGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22329; Mature: 22198

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATQNTRERIVSAAARLFYAEGIRAVSVDAVAEAAGLTKRTLYYHFKSKDELIAAYLEE
CCCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCHHHHEEEEECCHHHHHHHHHHH
RDQPNLKLFQKWFSETDGDAASKIKAIFLNLARAARHPKWKGCGFLRTSAELANMPGHPA
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHCCCCCCE
IRIAAAHKRKFEDWLRQSFETEGIAEAARLARQMLLLLDGSFAVVLLHRDPSYMETAGEA
EEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHH
AATLVKLALSEPSVQQPAGRGK
HHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AATQNTRERIVSAAARLFYAEGIRAVSVDAVAEAAGLTKRTLYYHFKSKDELIAAYLEE
CCCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCHHHHEEEEECCHHHHHHHHHHH
RDQPNLKLFQKWFSETDGDAASKIKAIFLNLARAARHPKWKGCGFLRTSAELANMPGHPA
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCHHHHCCCCCCE
IRIAAAHKRKFEDWLRQSFETEGIAEAARLARQMLLLLDGSFAVVLLHRDPSYMETAGEA
EEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHH
AATLVKLALSEPSVQQPAGRGK
HHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA