Definition Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession NC_009636
Length 3,781,904

Click here to switch to the map view.

The map label for this gene is 150397395

Identifier: 150397395

GI number: 150397395

Start: 2271552

End: 2272685

Strand: Direct

Name: 150397395

Synonym: Smed_2194

Alternate gene names: NA

Gene position: 2271552-2272685 (Clockwise)

Preceding gene: 150397394

Following gene: 150397396

Centisome position: 60.06

GC content: 62.96

Gene sequence:

>1134_bases
TTGTCTCGTCTGCTCCTCTGCCGCCGCAGCCTCGTTCGGGCTTTTGCATTTCTGGCCATCGCCTTCTCTCCGCTTGCCGC
GCTGGCCGAGGTGCAATGGCCAATGACCGTCACCGATGCGGTTGGCCGTGAGGTCGCGATTCCCGCGCCGCCCAGGGCGG
TTCTGCTTGGCAGCGGCTTCAATCTGATTGCCCTGTCCCTCATTCATCCGGACCCGATCGGCCTTCTCGCCGGCTGGTCC
GGCGATATGAAGGGCGACAATCCGGAGATTTACGAGAGCTTTTTGCGCAAGTTCCCAGCCCTCGGTGACGTGCCTCTGAT
CGACGACGGCAGCGGTCCCGGACTGTCCCTCGAGACCATCCTGACGCTCAAGGCCGATCTTGCCATCCTCGCAAACTGGC
AGGCGGACACGGAGGCGGGCCAGCGCGCGATGGAATATCTCGAAAGCATCGGCGTGCCTGTGATCGTCGTCGATTTCAAC
AACGAGGCGCTCAAGAACACACCGGATAACATGCGCCTTCTCGGCAAGGTCTTCGAGAGAGAAGAGCAGGCGGAAGACTT
CGCCCGATTCTACGAAGAGCGCCTTGCCCGCATTCGCGAGCGCGTTGCCGGGCACCCGGAGCCCGGGCCCAGGGTTCTCA
TGGAAGCGTTCCCTGCAGCCGATCGTTGCTGCTGGGCCTATGGCACCGGGGGACTGGGCGAATTCATTGCCGTCACCGGC
AGCCGCAACGTCGCCGAGGGAGCGCTACCGCGCCCGGGAGGCATGATGAATGCGGAAGCAGTCATGGCCGAAAACCCGGA
TGTCTATATAGCCACCTCCTCGCCGGGCGGAAAATACAGCGGCTTTTCGATCGGCCCCGGGGTCGGGGCCGAAGAGGCGG
AGACCACGCTCGCGGCAGTCGTAGACAAACCGTTGATGGCAAGCATCGCGGCCGTCCGCGACCGACGCGTCCACGGTATC
TGGAATTTCTTCAATGCCGTTCCGCTGAACATCGTCGCAGCGGAAGCATTCGCCTCCTGGCTGCGCCCCGACCTCTTCCC
CGACATCAACCCGGCCGCAACGCTCTCCGAGATAAACCGTCGTTTCGCCGCGGTCCCCTTTGAAGGCGCCTATTGGGTCA
GCCTCAAGAAATAG

Upstream 100 bases:

>100_bases
CCGTCTGCCGGCGCAAGATCTGCTGTCTCAGGTATCTCCTCCCTGGCATCCCGAGCTGCGGCAGTCTCTGTGCCCTTCCC
AGTCAAAGGAAACAATAGCT

Downstream 100 bases:

>100_bases
GCCGTCGGGTCGTGAAAGCGCGAGCGCGGGTTTTACCGTGGTTTCCGCATATAGAAGTGGAGCGACGATTGCCACGGCCG
CGCCGGGCTATATAAGGTCC

Product: ferrichrome/ferrioxamine B periplasmic transporter

Products: NA

Alternate protein names: Ferrichrome/Ferrioxamine B Periplasmic Transporter; Iron Transporter; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Vitamin; ABC-Type Transport System Periplasmic Component; Iron(III) ABC Transporter; Ferrisiderophore Receptor Irp6A; Copper Amine Oxidase Domain Protein; Copper Amine Oxidase Domain-Containing Protein

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGFNLIALSLIHPDPIGLLAGWS
GDMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETILTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFN
NEALKNTPDNMRLLGKVFEREEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTG
SRNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAVVDKPLMASIAAVRDRRVHGI
WNFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINRRFAAVPFEGAYWVSLKK

Sequences:

>Translated_377_residues
MSRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGFNLIALSLIHPDPIGLLAGWS
GDMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETILTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFN
NEALKNTPDNMRLLGKVFEREEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTG
SRNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAVVDKPLMASIAAVRDRRVHGI
WNFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINRRFAAVPFEGAYWVSLKK
>Mature_376_residues
SRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGFNLIALSLIHPDPIGLLAGWSG
DMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETILTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFNN
EALKNTPDNMRLLGKVFEREEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTGS
RNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAVVDKPLMASIAAVRDRRVHGIW
NFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINRRFAAVPFEGAYWVSLKK

Specific function: Unknown

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40682; Mature: 40551

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCEEECCCCCCEEEEECCC
NLIALSLIHPDPIGLLAGWSGDMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETI
CEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHH
LTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFNNEALKNTPDNMRLLGKVFER
HHHHHCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCHHHHHHHHHHHH
EEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCEEEEEC
SRNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAV
CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
VDKPLMASIAAVRDRRVHGIWNFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINR
HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
RFAAVPFEGAYWVSLKK
HHCCCCCCCEEEEEECC
>Mature Secondary Structure 
SRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCEEECCCCCCEEEEECCC
NLIALSLIHPDPIGLLAGWSGDMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETI
CEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHH
LTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFNNEALKNTPDNMRLLGKVFER
HHHHHCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCHHHHHHHHHHHH
EEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCEEEEEC
SRNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAV
CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
VDKPLMASIAAVRDRRVHGIWNFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINR
HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
RFAAVPFEGAYWVSLKK
HHCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA