| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397395
Identifier: 150397395
GI number: 150397395
Start: 2271552
End: 2272685
Strand: Direct
Name: 150397395
Synonym: Smed_2194
Alternate gene names: NA
Gene position: 2271552-2272685 (Clockwise)
Preceding gene: 150397394
Following gene: 150397396
Centisome position: 60.06
GC content: 62.96
Gene sequence:
>1134_bases TTGTCTCGTCTGCTCCTCTGCCGCCGCAGCCTCGTTCGGGCTTTTGCATTTCTGGCCATCGCCTTCTCTCCGCTTGCCGC GCTGGCCGAGGTGCAATGGCCAATGACCGTCACCGATGCGGTTGGCCGTGAGGTCGCGATTCCCGCGCCGCCCAGGGCGG TTCTGCTTGGCAGCGGCTTCAATCTGATTGCCCTGTCCCTCATTCATCCGGACCCGATCGGCCTTCTCGCCGGCTGGTCC GGCGATATGAAGGGCGACAATCCGGAGATTTACGAGAGCTTTTTGCGCAAGTTCCCAGCCCTCGGTGACGTGCCTCTGAT CGACGACGGCAGCGGTCCCGGACTGTCCCTCGAGACCATCCTGACGCTCAAGGCCGATCTTGCCATCCTCGCAAACTGGC AGGCGGACACGGAGGCGGGCCAGCGCGCGATGGAATATCTCGAAAGCATCGGCGTGCCTGTGATCGTCGTCGATTTCAAC AACGAGGCGCTCAAGAACACACCGGATAACATGCGCCTTCTCGGCAAGGTCTTCGAGAGAGAAGAGCAGGCGGAAGACTT CGCCCGATTCTACGAAGAGCGCCTTGCCCGCATTCGCGAGCGCGTTGCCGGGCACCCGGAGCCCGGGCCCAGGGTTCTCA TGGAAGCGTTCCCTGCAGCCGATCGTTGCTGCTGGGCCTATGGCACCGGGGGACTGGGCGAATTCATTGCCGTCACCGGC AGCCGCAACGTCGCCGAGGGAGCGCTACCGCGCCCGGGAGGCATGATGAATGCGGAAGCAGTCATGGCCGAAAACCCGGA TGTCTATATAGCCACCTCCTCGCCGGGCGGAAAATACAGCGGCTTTTCGATCGGCCCCGGGGTCGGGGCCGAAGAGGCGG AGACCACGCTCGCGGCAGTCGTAGACAAACCGTTGATGGCAAGCATCGCGGCCGTCCGCGACCGACGCGTCCACGGTATC TGGAATTTCTTCAATGCCGTTCCGCTGAACATCGTCGCAGCGGAAGCATTCGCCTCCTGGCTGCGCCCCGACCTCTTCCC CGACATCAACCCGGCCGCAACGCTCTCCGAGATAAACCGTCGTTTCGCCGCGGTCCCCTTTGAAGGCGCCTATTGGGTCA GCCTCAAGAAATAG
Upstream 100 bases:
>100_bases CCGTCTGCCGGCGCAAGATCTGCTGTCTCAGGTATCTCCTCCCTGGCATCCCGAGCTGCGGCAGTCTCTGTGCCCTTCCC AGTCAAAGGAAACAATAGCT
Downstream 100 bases:
>100_bases GCCGTCGGGTCGTGAAAGCGCGAGCGCGGGTTTTACCGTGGTTTCCGCATATAGAAGTGGAGCGACGATTGCCACGGCCG CGCCGGGCTATATAAGGTCC
Product: ferrichrome/ferrioxamine B periplasmic transporter
Products: NA
Alternate protein names: Ferrichrome/Ferrioxamine B Periplasmic Transporter; Iron Transporter; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Vitamin; ABC-Type Transport System Periplasmic Component; Iron(III) ABC Transporter; Ferrisiderophore Receptor Irp6A; Copper Amine Oxidase Domain Protein; Copper Amine Oxidase Domain-Containing Protein
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MSRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGFNLIALSLIHPDPIGLLAGWS GDMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETILTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFN NEALKNTPDNMRLLGKVFEREEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTG SRNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAVVDKPLMASIAAVRDRRVHGI WNFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINRRFAAVPFEGAYWVSLKK
Sequences:
>Translated_377_residues MSRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGFNLIALSLIHPDPIGLLAGWS GDMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETILTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFN NEALKNTPDNMRLLGKVFEREEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTG SRNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAVVDKPLMASIAAVRDRRVHGI WNFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINRRFAAVPFEGAYWVSLKK >Mature_376_residues SRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGFNLIALSLIHPDPIGLLAGWSG DMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETILTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFNN EALKNTPDNMRLLGKVFEREEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTGS RNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAVVDKPLMASIAAVRDRRVHGIW NFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINRRFAAVPFEGAYWVSLKK
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40682; Mature: 40551
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCEEECCCCCCEEEEECCC NLIALSLIHPDPIGLLAGWSGDMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETI CEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHH LTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFNNEALKNTPDNMRLLGKVFER HHHHHCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCHHHHHHHHHHHH EEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCEEEEEC SRNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAV CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH VDKPLMASIAAVRDRRVHGIWNFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINR HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH RFAAVPFEGAYWVSLKK HHCCCCCCCEEEEEECC >Mature Secondary Structure SRLLLCRRSLVRAFAFLAIAFSPLAALAEVQWPMTVTDAVGREVAIPAPPRAVLLGSGF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCEEECCCCCCEEEEECCC NLIALSLIHPDPIGLLAGWSGDMKGDNPEIYESFLRKFPALGDVPLIDDGSGPGLSLETI CEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHH LTLKADLAILANWQADTEAGQRAMEYLESIGVPVIVVDFNNEALKNTPDNMRLLGKVFER HHHHHCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCHHHHHHHHHHHH EEQAEDFARFYEERLARIRERVAGHPEPGPRVLMEAFPAADRCCWAYGTGGLGEFIAVTG HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCEEEEEC SRNVAEGALPRPGGMMNAEAVMAENPDVYIATSSPGGKYSGFSIGPGVGAEEAETTLAAV CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH VDKPLMASIAAVRDRRVHGIWNFFNAVPLNIVAAEAFASWLRPDLFPDINPAATLSEINR HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH RFAAVPFEGAYWVSLKK HHCCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA