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The map label for this gene is xylB [H]

Identifier: 150397360

GI number: 150397360

Start: 2228183

End: 2229760

Strand: Reverse

Name: xylB [H]

Synonym: Smed_2159

Alternate gene names: 150397360

Gene position: 2229760-2228183 (Counterclockwise)

Preceding gene: 150397361

Following gene: 150397359

Centisome position: 58.96

GC content: 64.45

Gene sequence:

>1578_bases
ATGCGCGACATCCTCATCGGCATCGATGCCGGAACGTCGGTCATCAAATCGGTCGCCTTCGATCTCAGCGGCAGGCAGCT
CGCGATGACGGCGGTTCCGAACAGCTATGAGGCGGTGGGCCGCACCGGCAGCGTGCAGGAGTTACGGCGTACCTGGACGG
ACACCGTCAAAACCCTGGCCGAGCTCTCGGCCAGGATCGAGAACCTCCCTGGCCGCGTTGCCGCTATCGCGGTGACCGGT
CAGGGGGACGGCACCTGGATGATCGACGGCGATGGAGAGCCGGTCGGCAAAGGCTGGCTCTGGCTCGATGCGCGCGCAAG
CGCCGTCGTCGAGCGGCTGCGGGCTGAAAGCGGTGACGCGGAACGTTTCGCGCGCACCGGCTCCGGTCTTGCCGCCTGCC
AGCAGGGCCCGCAGCTTCGCTGGATGAAGGATCACGCACCGGAGATGCTGGAAGGGGCGGCGACCGCATTTCATTGCAAG
GACTGGCTCTATTTCAATCTCACCGACAAGCGCGCGACCGATCCCTCGGAGGCGAATTTCACCTTCGGCGATTTCCGCAC
ACGGCAATATTGCGATGATGTGATCGACTTTCTCGGTCTCAAGGACCTCAAGCACCTGCTGCCGGAGATCGTCGACGGTG
CTACCACGCATCACCCACTCTCGGCCGCCGCGGCGGCCGCTGCGGGCTTGCCGGCGGGAACGCCGGTCGTGCTCGGCTAT
GTCGACGTCGTCTGCACGGCACTCGGCGCCGGGCTCTATGAACCCGGAACCGACGCGGGCTGCTCGATCATCGGCTCGAC
GGGCATGCATATGCGGCTGGCGGCCGGTGCCGATGATGTCCGGCTAAACCAGAACCATACCGGCTACACCATGTGCATGC
CGATCCCCAACACCTACGCGCAGATGCAGTCGAATATGGCGGCGACGCTCAATATCGACTGGATTCTGCAATTTGCGGGA
GATCTCCTCAAAGGGATGGGGATCGAGAAGTCGAAGAGCGATCTGCTCGCCCATGTGGATCACTGGCTCGCCGAGGCGAA
GGAGACTCCGCTTCTCTTCCATCCCTATATTTCGGAGGCCGGGGAGCGCGGTCCCTTCGTCGATGCCGCTGCCCGCGCGT
CCTTCGTCGGCCTTTCGATCAATCACGGCTTCGGCGACATGGTGCATGCCGTGTTCGACGGTCTCGCCTTTGCTGCGCGG
GATTGTTACGCCGAAATGGGGCCGCTGCCGGCACGCGTGCGTTTGTCGGGCGGGGCGGCTCGCAGCGCCTCGTTGCGGCG
CATTCTCGGTGGCGCTCTGGGCGCCAGCATCCAGACGAGCGAACGCGAGGAGGCAGGTGCCGCCGGTGCGGCTATGATCG
CAGCCGTTTCGCTGGGAATTCATCCCACCATGGCCGATTGCGTTCGCGAATGGGTTCGGCCGCATCACCGGCCGGCAGAG
CCGGCGGATAAGGATCTCGCTCGTCGCTACGACGCAATTTTCCCCGCCTACAAGCAGTCGCGCCTCGCGCTCGAACCCGT
CTGGCATGCGCTCTCCCACGCAACCGGAACGGGAAACCAACAGGAAAGACCGCAATGA

Upstream 100 bases:

>100_bases
AGATCGGTCAGCCGATCGGCATCCGGCTCGATCCGGGAAGCCTGCATGTTTTCGACAGCGAAAGCGGTATGGCGATCTCG
CATGGCGAGGAGCTCGCCTG

Downstream 100 bases:

>100_bases
AGAAGATAGCCATTATCGGCGACCGGTTCATGCTGCCGGATGTTTTTCGCGACAAGATCGTCGAGGCATGCGGCGACGGG
CACGAGATAAGCATGCTCGA

Product: carbohydrate kinase FGGY

Products: ADP; L-Xylulose 5-Phosphate. [C]

Alternate protein names: NA

Number of amino acids: Translated: 525; Mature: 525

Protein sequence:

>525_residues
MRDILIGIDAGTSVIKSVAFDLSGRQLAMTAVPNSYEAVGRTGSVQELRRTWTDTVKTLAELSARIENLPGRVAAIAVTG
QGDGTWMIDGDGEPVGKGWLWLDARASAVVERLRAESGDAERFARTGSGLAACQQGPQLRWMKDHAPEMLEGAATAFHCK
DWLYFNLTDKRATDPSEANFTFGDFRTRQYCDDVIDFLGLKDLKHLLPEIVDGATTHHPLSAAAAAAAGLPAGTPVVLGY
VDVVCTALGAGLYEPGTDAGCSIIGSTGMHMRLAAGADDVRLNQNHTGYTMCMPIPNTYAQMQSNMAATLNIDWILQFAG
DLLKGMGIEKSKSDLLAHVDHWLAEAKETPLLFHPYISEAGERGPFVDAAARASFVGLSINHGFGDMVHAVFDGLAFAAR
DCYAEMGPLPARVRLSGGAARSASLRRILGGALGASIQTSEREEAGAAGAAMIAAVSLGIHPTMADCVREWVRPHHRPAE
PADKDLARRYDAIFPAYKQSRLALEPVWHALSHATGTGNQQERPQ

Sequences:

>Translated_525_residues
MRDILIGIDAGTSVIKSVAFDLSGRQLAMTAVPNSYEAVGRTGSVQELRRTWTDTVKTLAELSARIENLPGRVAAIAVTG
QGDGTWMIDGDGEPVGKGWLWLDARASAVVERLRAESGDAERFARTGSGLAACQQGPQLRWMKDHAPEMLEGAATAFHCK
DWLYFNLTDKRATDPSEANFTFGDFRTRQYCDDVIDFLGLKDLKHLLPEIVDGATTHHPLSAAAAAAAGLPAGTPVVLGY
VDVVCTALGAGLYEPGTDAGCSIIGSTGMHMRLAAGADDVRLNQNHTGYTMCMPIPNTYAQMQSNMAATLNIDWILQFAG
DLLKGMGIEKSKSDLLAHVDHWLAEAKETPLLFHPYISEAGERGPFVDAAARASFVGLSINHGFGDMVHAVFDGLAFAAR
DCYAEMGPLPARVRLSGGAARSASLRRILGGALGASIQTSEREEAGAAGAAMIAAVSLGIHPTMADCVREWVRPHHRPAE
PADKDLARRYDAIFPAYKQSRLALEPVWHALSHATGTGNQQERPQ
>Mature_525_residues
MRDILIGIDAGTSVIKSVAFDLSGRQLAMTAVPNSYEAVGRTGSVQELRRTWTDTVKTLAELSARIENLPGRVAAIAVTG
QGDGTWMIDGDGEPVGKGWLWLDARASAVVERLRAESGDAERFARTGSGLAACQQGPQLRWMKDHAPEMLEGAATAFHCK
DWLYFNLTDKRATDPSEANFTFGDFRTRQYCDDVIDFLGLKDLKHLLPEIVDGATTHHPLSAAAAAAAGLPAGTPVVLGY
VDVVCTALGAGLYEPGTDAGCSIIGSTGMHMRLAAGADDVRLNQNHTGYTMCMPIPNTYAQMQSNMAATLNIDWILQFAG
DLLKGMGIEKSKSDLLAHVDHWLAEAKETPLLFHPYISEAGERGPFVDAAARASFVGLSINHGFGDMVHAVFDGLAFAAR
DCYAEMGPLPARVRLSGGAARSASLRRILGGALGASIQTSEREEAGAAGAAMIAAVSLGIHPTMADCVREWVRPHHRPAE
PADKDLARRYDAIFPAYKQSRLALEPVWHALSHATGTGNQQERPQ

Specific function: L-lyxose utilization. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Escherichia coli, GI1790005, Length=484, Percent_Identity=23.1404958677686, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787789, Length=522, Percent_Identity=25.2873563218391, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1789987, Length=509, Percent_Identity=24.3614931237721, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789168, Length=255, Percent_Identity=22.3529411764706, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484
- InterPro:   IPR006000 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: 2.7.1.53 [C]

Molecular weight: Translated: 56200; Mature: 56200

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS00445 FGGY_KINASES_2 ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDILIGIDAGTSVIKSVAFDLSGRQLAMTAVPNSYEAVGRTGSVQELRRTWTDTVKTLA
CCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHH
ELSARIENLPGRVAAIAVTGQGDGTWMIDGDGEPVGKGWLWLDARASAVVERLRAESGDA
HHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
ERFARTGSGLAACQQGPQLRWMKDHAPEMLEGAATAFHCKDWLYFNLTDKRATDPSEANF
HHHHHCCCCHHHHCCCCCEEEHHHCCHHHHHHHHHHEEECCEEEEEECCCCCCCCCCCCC
TFGDFRTRQYCDDVIDFLGLKDLKHLLPEIVDGATTHHPLSAAAAAAAGLPAGTPVVLGY
CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHH
VDVVCTALGAGLYEPGTDAGCSIIGSTGMHMRLAAGADDVRLNQNHTGYTMCMPIPNTYA
HHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEECCCCCCEEEEEECCCHHH
QMQSNMAATLNIDWILQFAGDLLKGMGIEKSKSDLLAHVDHWLAEAKETPLLFHPYISEA
HHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHC
GERGPFVDAAARASFVGLSINHGFGDMVHAVFDGLAFAARDCYAEMGPLPARVRLSGGAA
CCCCCCHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
RSASLRRILGGALGASIQTSEREEAGAAGAAMIAAVSLGIHPTMADCVREWVRPHHRPAE
HHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
PADKDLARRYDAIFPAYKQSRLALEPVWHALSHATGTGNQQERPQ
CCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRDILIGIDAGTSVIKSVAFDLSGRQLAMTAVPNSYEAVGRTGSVQELRRTWTDTVKTLA
CCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHH
ELSARIENLPGRVAAIAVTGQGDGTWMIDGDGEPVGKGWLWLDARASAVVERLRAESGDA
HHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHHCCCCH
ERFARTGSGLAACQQGPQLRWMKDHAPEMLEGAATAFHCKDWLYFNLTDKRATDPSEANF
HHHHHCCCCHHHHCCCCCEEEHHHCCHHHHHHHHHHEEECCEEEEEECCCCCCCCCCCCC
TFGDFRTRQYCDDVIDFLGLKDLKHLLPEIVDGATTHHPLSAAAAAAAGLPAGTPVVLGY
CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHH
VDVVCTALGAGLYEPGTDAGCSIIGSTGMHMRLAAGADDVRLNQNHTGYTMCMPIPNTYA
HHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEECCCCCCEEEEEECCCHHH
QMQSNMAATLNIDWILQFAGDLLKGMGIEKSKSDLLAHVDHWLAEAKETPLLFHPYISEA
HHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHC
GERGPFVDAAARASFVGLSINHGFGDMVHAVFDGLAFAARDCYAEMGPLPARVRLSGGAA
CCCCCCHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
RSASLRRILGGALGASIQTSEREEAGAAGAAMIAAVSLGIHPTMADCVREWVRPHHRPAE
HHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
PADKDLARRYDAIFPAYKQSRLALEPVWHALSHATGTGNQQERPQ
CCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-Xylulose [C]

Specific reaction: ATP + L-Xylulose = ADP + L-Xylulose 5-Phosphate. [C]

General reaction: Phospho group transfer [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA