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The map label for this gene is cspA [H]

Identifier: 150397151

GI number: 150397151

Start: 2003371

End: 2003580

Strand: Direct

Name: cspA [H]

Synonym: Smed_1949

Alternate gene names: 150397151

Gene position: 2003371-2003580 (Clockwise)

Preceding gene: 150397146

Following gene: 150397152

Centisome position: 52.97

GC content: 58.57

Gene sequence:

>210_bases
ATGAACTCAGGCACCGTAAAGTGGTTTAACAGCACCAAGGGCTTCGGCTTCATCCAGCCTGACGATGGCGCGACGGACGT
GTTCGTACATGCCTCCGCCGTTGAACGCGCTGGAATGCGCTCGCTCGTAGAGGGCCAGAAGGTCACCTTCGACATCGTCC
GCGACACGAAGTCCGGCAAGAGCTCGGCAGACAATCTGCGGTCTGCATAA

Upstream 100 bases:

>100_bases
TTGTCTACGCGCCGACGCGCTTCGTCAGATTTCCTCTCAAATATCGATCAAACCGGGCCGATATTCGTCCGGAAACTCTA
GCGATTGAAAGGAAATCGTT

Downstream 100 bases:

>100_bases
ATTCGTCATTCGCCTCCGCTGACCACGGATGTACTGGCAGGGAGCGCTTGAATGACGGGGCGCCCTTGCGCGTCTGAAAA
GACGCGCGGCGCTCAAGAGG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTKSGKSSADNLRSA

Sequences:

>Translated_69_residues
MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTKSGKSSADNLRSA
>Mature_69_residues
MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTKSGKSSADNLRSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=55.7377049180328, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1789979, Length=50, Percent_Identity=66, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1787839, Length=50, Percent_Identity=64, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=52.4590163934426, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=48.3870967741936, Blast_Score=69, Evalue=8e-14,
Organism=Escherichia coli, GI2367114, Length=50, Percent_Identity=60, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787834, Length=55, Percent_Identity=52.7272727272727, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7424; Mature: 7424

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTKSGK
CCCCCEEEECCCCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
SSADNLRSA
CCCCCCCCC
>Mature Secondary Structure
MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTFDIVRDTKSGK
CCCCCEEEECCCCCCEEECCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
SSADNLRSA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10618253; 11481430 [H]