| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is modB [C]
Identifier: 150397149
GI number: 150397149
Start: 1999984
End: 2001663
Strand: Reverse
Name: modB [C]
Synonym: Smed_1947
Alternate gene names: 150397149
Gene position: 2001663-1999984 (Counterclockwise)
Preceding gene: 150397150
Following gene: 150397148
Centisome position: 52.93
GC content: 64.64
Gene sequence:
>1680_bases ATGTCCGGGGTCGGGGAGCCCGCATGGCTCCTTGCCTTCGTGTGCGGCGCCGTCTTCCTGCTTTCGGTGCTGCCTCTGAT CCACCTTGGTTGGGCTGGCCTCAAAGGTCTCGAAGGCGGCGAGGCGGCGAGCGTGCTCCTCGAGGCGGCGACCTTCGCCG CACTTCGCAACACACTCGTTGCTGCCGCGGGCGGCATGGTGATCTCGCTTGTCGTCGGCGCACTCTTCGCCTTCGTGGTG GCGCTTACGGACATACGCGGTAAACTTGCCTTGAGCTTCGCCTTCATGCTTCCGATGATGATCCCGCCACAGGTGACGGC CCTAGCCTGGGTGGAGATGTCGGGGCCCTCGAGCCCCTTGCTCAAGACATTGGGGCTTGCTCCGCCGCTCGGCAGTCCGC AGCCGCTTTATTCGCTAGCGGGCATCGCACTGCTTCTCGGCGTGCAGCATGCGCCGCTTGTCTTCCTGGCAATCAAGGCC GGACTTGCGACGCATCCGCGCGACGGCGTGGAGGCGGCGCGGCTTTCCGGCGCCTCGCCCTGGCGCGTCTTCCGCGACAT CGTTCTGCCGCTGGCCTGTCCGGCGCTGATCGCCGGTGGCGCCATCGCCTTCATCTCGGGCATCGGGAATTTCGGCATTC CGGCAATTCTCGGCATTCCCGCATCGATCGAAACGCTACCGACCTTGATCTTCGCCAAGTTCGCGAGTTTCGGTTCGTCG ACATTCGGCGAAATTGCCGTGCTTTCGACGATCATCGCATCGATTTCCGCGGGAGGGCTGCTCCTGCAGCAGCGGGCACT CAAGGGCCGGGATTATCGCCTCATCGGCCTTACCGGGGCGAGGGCCGCCTTCACGCTGGGGCGTTTGCGAATTGCGGTGG AGACCCTGCTTTGGGGCACCCTCGCACTGGTGCTCGTCGCGCCGCTCCTGGCGCTTGTCGCAAGTTCACTCGTGCCGGCC TATGGTGTGCCGCTCACTCTTCACACTGTCTCCCTGCAGGCCTATGGCGAGGTTCTCTTCCGCCAGACGGTGACGCTGAC GGCGCTGAAGAACTCCGTCTTCCTTGCCTCGGCCGCGGCAGTCGGCCTTCTTGTGATTGCTCTGCCGGCCGGGTACCTGC TCGCAGCGCGACGCGGGAGGGTGGCCAATCTCCTGGCGATCCTTATCGAAATTCCCTACGCACTGCCCGGCATCGTGCTC GCCGTCGCCTTCATCCTTGCCTTCGCGGCACCGCTGCCGGTGATCGGCGTTTCGATCTATGGCACCATCTGGATCATTCT CGCCGCCTATCTCTCATCCTTCTTCGCCGTGAGCCTTAAGCCGGTGATGAGCGCCTTCCTGCAGATGGATCCCTCGCTCG AGGAGGCGGCGCGGCTTGCAGGCGCAGGCTTCCTGCGCCGCATGCGGGACGTGCTGCTGCCGCTGGTGGCGCCCGCAGCG GGTGCCTCTGTCATTCTCGTCTTCCTGATCGCGGCGAACGAGCTGACGGTCTCGGCGCTCCTCTGGTCCGCAGGCACGCA GACGCTCGGCGTGGCGATCTTCAATCTCGACGATAGCGGCTCCTCCAATCTTGCCTCGGCACTTTCTGTGCTTGTCGTCG CGGTGGTGATCGGGTTGATGGCGACGCTCGAAGTCTTGGCGAAATACCTGCCGGAGGGCGTGCTGCCATGGCGCAACTGA
Upstream 100 bases:
>100_bases GCCACCGCCTTACGCGGACGAAGTTCGTGTACCTGAAACGCGTTCTGCGAAGGCCGGTCCGAGGCGGCAATCGTCATATT TTCGATTTCGGGGGAAGCGC
Downstream 100 bases:
>100_bases TCCTCAATCACCTGACCAAGGATTTCGGAGCAAAAGGTCCGGGCGAGGGAGGGCCGGCGGTTTCGGATGTGTCGCTGACG CTGCGCAAGCAGGGCTTCCT
Product: binding-protein-dependent transport systems inner membrane component
Products: ADP; phosphate; MoO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 559; Mature: 558
Protein sequence:
>559_residues MSGVGEPAWLLAFVCGAVFLLSVLPLIHLGWAGLKGLEGGEAASVLLEAATFAALRNTLVAAAGGMVISLVVGALFAFVV ALTDIRGKLALSFAFMLPMMIPPQVTALAWVEMSGPSSPLLKTLGLAPPLGSPQPLYSLAGIALLLGVQHAPLVFLAIKA GLATHPRDGVEAARLSGASPWRVFRDIVLPLACPALIAGGAIAFISGIGNFGIPAILGIPASIETLPTLIFAKFASFGSS TFGEIAVLSTIIASISAGGLLLQQRALKGRDYRLIGLTGARAAFTLGRLRIAVETLLWGTLALVLVAPLLALVASSLVPA YGVPLTLHTVSLQAYGEVLFRQTVTLTALKNSVFLASAAAVGLLVIALPAGYLLAARRGRVANLLAILIEIPYALPGIVL AVAFILAFAAPLPVIGVSIYGTIWIILAAYLSSFFAVSLKPVMSAFLQMDPSLEEAARLAGAGFLRRMRDVLLPLVAPAA GASVILVFLIAANELTVSALLWSAGTQTLGVAIFNLDDSGSSNLASALSVLVVAVVIGLMATLEVLAKYLPEGVLPWRN
Sequences:
>Translated_559_residues MSGVGEPAWLLAFVCGAVFLLSVLPLIHLGWAGLKGLEGGEAASVLLEAATFAALRNTLVAAAGGMVISLVVGALFAFVV ALTDIRGKLALSFAFMLPMMIPPQVTALAWVEMSGPSSPLLKTLGLAPPLGSPQPLYSLAGIALLLGVQHAPLVFLAIKA GLATHPRDGVEAARLSGASPWRVFRDIVLPLACPALIAGGAIAFISGIGNFGIPAILGIPASIETLPTLIFAKFASFGSS TFGEIAVLSTIIASISAGGLLLQQRALKGRDYRLIGLTGARAAFTLGRLRIAVETLLWGTLALVLVAPLLALVASSLVPA YGVPLTLHTVSLQAYGEVLFRQTVTLTALKNSVFLASAAAVGLLVIALPAGYLLAARRGRVANLLAILIEIPYALPGIVL AVAFILAFAAPLPVIGVSIYGTIWIILAAYLSSFFAVSLKPVMSAFLQMDPSLEEAARLAGAGFLRRMRDVLLPLVAPAA GASVILVFLIAANELTVSALLWSAGTQTLGVAIFNLDDSGSSNLASALSVLVVAVVIGLMATLEVLAKYLPEGVLPWRN >Mature_558_residues SGVGEPAWLLAFVCGAVFLLSVLPLIHLGWAGLKGLEGGEAASVLLEAATFAALRNTLVAAAGGMVISLVVGALFAFVVA LTDIRGKLALSFAFMLPMMIPPQVTALAWVEMSGPSSPLLKTLGLAPPLGSPQPLYSLAGIALLLGVQHAPLVFLAIKAG LATHPRDGVEAARLSGASPWRVFRDIVLPLACPALIAGGAIAFISGIGNFGIPAILGIPASIETLPTLIFAKFASFGSST FGEIAVLSTIIASISAGGLLLQQRALKGRDYRLIGLTGARAAFTLGRLRIAVETLLWGTLALVLVAPLLALVASSLVPAY GVPLTLHTVSLQAYGEVLFRQTVTLTALKNSVFLASAAAVGLLVIALPAGYLLAARRGRVANLLAILIEIPYALPGIVLA VAFILAFAAPLPVIGVSIYGTIWIILAAYLSSFFAVSLKPVMSAFLQMDPSLEEAARLAGAGFLRRMRDVLLPLVAPAAG ASVILVFLIAANELTVSALLWSAGTQTLGVAIFNLDDSGSSNLASALSVLVVAVVIGLMATLEVLAKYLPEGVLPWRN
Specific function: Probably part of the binding-protein-dependent transport system y4fNOP. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1178
COG function: function code P; ABC-type Fe3+ transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transmembrane type-1 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 57618; Mature: 57486
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGVGEPAWLLAFVCGAVFLLSVLPLIHLGWAGLKGLEGGEAASVLLEAATFAALRNTLV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH AAAGGMVISLVVGALFAFVVALTDIRGKLALSFAFMLPMMIPPQVTALAWVEMSGPSSPL HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCHH LKTLGLAPPLGSPQPLYSLAGIALLLGVQHAPLVFLAIKAGLATHPRDGVEAARLSGASP HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCH WRVFRDIVLPLACPALIAGGAIAFISGIGNFGIPAILGIPASIETLPTLIFAKFASFGSS HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCC TFGEIAVLSTIIASISAGGLLLQQRALKGRDYRLIGLTGARAAFTLGRLRIAVETLLWGT CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH LALVLVAPLLALVASSLVPAYGVPLTLHTVSLQAYGEVLFRQTVTLTALKNSVFLASAAA HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGLLVIALPAGYLLAARRGRVANLLAILIEIPYALPGIVLAVAFILAFAAPLPVIGVSIY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GTIWIILAAYLSSFFAVSLKPVMSAFLQMDPSLEEAARLAGAGFLRRMRDVLLPLVAPAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC GASVILVFLIAANELTVSALLWSAGTQTLGVAIFNLDDSGSSNLASALSVLVVAVVIGLM CHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH ATLEVLAKYLPEGVLPWRN HHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SGVGEPAWLLAFVCGAVFLLSVLPLIHLGWAGLKGLEGGEAASVLLEAATFAALRNTLV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH AAAGGMVISLVVGALFAFVVALTDIRGKLALSFAFMLPMMIPPQVTALAWVEMSGPSSPL HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCHH LKTLGLAPPLGSPQPLYSLAGIALLLGVQHAPLVFLAIKAGLATHPRDGVEAARLSGASP HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCH WRVFRDIVLPLACPALIAGGAIAFISGIGNFGIPAILGIPASIETLPTLIFAKFASFGSS HHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCC TFGEIAVLSTIIASISAGGLLLQQRALKGRDYRLIGLTGARAAFTLGRLRIAVETLLWGT CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH LALVLVAPLLALVASSLVPAYGVPLTLHTVSLQAYGEVLFRQTVTLTALKNSVFLASAAA HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGLLVIALPAGYLLAARRGRVANLLAILIEIPYALPGIVLAVAFILAFAAPLPVIGVSIY HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH GTIWIILAAYLSSFFAVSLKPVMSAFLQMDPSLEEAARLAGAGFLRRMRDVLLPLVAPAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC GASVILVFLIAANELTVSALLWSAGTQTLGVAIFNLDDSGSSNLASALSVLVVAVVIGLM CHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH ATLEVLAKYLPEGVLPWRN HHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; MoO42- [Periplasm]; H2O [C]
Specific reaction: ATP + MoO42- [Periplasm] + H2O = ADP + phosphate + MoO42- [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]