| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397128
Identifier: 150397128
GI number: 150397128
Start: 1981421
End: 1981942
Strand: Direct
Name: 150397128
Synonym: Smed_1926
Alternate gene names: NA
Gene position: 1981421-1981942 (Clockwise)
Preceding gene: 150397127
Following gene: 150397129
Centisome position: 52.39
GC content: 60.73
Gene sequence:
>522_bases ATGAGCGGCCCGGTCCTATTGCAATGGAACGGCGAGGCCTTCCAGCCGGCAAACCGGCACTGGGCCCGCGAGTGCGACAA GCGTTTCGTGGTCGGCGAGTTCTATACGCTCGCCGAGCACAACGACCGCAGCATGAATTCGCACCGGCATTATTTCGCCG CGGTCGCCGATGCCTGGCGGAACCTGCCCGAGCAATATTCCGGCCTGCCTTTCGCCGAATCCGCTGAGCACCTGAGGGCC TATGCCCTGATCAAGAAGGGCTATTGCGACACGCATACCATCGTCTGCTCTAGCAAAGCGGAGGCAAAGAGGCTCGCGGC CTTCATCCGCCCGATTGACGCTTTCTCCGCTGTCGACGTGAAGGAAGCGACCGTTACCCGCTACGTGGCGAAAAGCCAGT CAATGAAGGCGATGGACAAGCAGGAATTTCAGGAAAGCAAGACGGCCGTTCTCGACTTCCTCGACGATCTAATCGGAGTC GAGCGCGGCACCACGCAGCGAAACGCGGGAGCCGCAGCATGA
Upstream 100 bases:
>100_bases GAACTGAAAAAGAGGCTCGAAGCCGCAATCGCGCGTGCCCCGGCAAAGAGTGCCGTGACCGACGCCGAGCTTCGCACCCA CGTTTTGGCGGCGGGCTGAC
Downstream 100 bases:
>100_bases GCGTCTCAGACTTGATCCTTGGTCACCTTCGGCGGAACCCGGCCAGTGTGATGAACGGGGTTGTCCTTGCCAGCACCTTC CGTCGGGTTCTCCCGCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MSGPVLLQWNGEAFQPANRHWARECDKRFVVGEFYTLAEHNDRSMNSHRHYFAAVADAWRNLPEQYSGLPFAESAEHLRA YALIKKGYCDTHTIVCSSKAEAKRLAAFIRPIDAFSAVDVKEATVTRYVAKSQSMKAMDKQEFQESKTAVLDFLDDLIGV ERGTTQRNAGAAA
Sequences:
>Translated_173_residues MSGPVLLQWNGEAFQPANRHWARECDKRFVVGEFYTLAEHNDRSMNSHRHYFAAVADAWRNLPEQYSGLPFAESAEHLRA YALIKKGYCDTHTIVCSSKAEAKRLAAFIRPIDAFSAVDVKEATVTRYVAKSQSMKAMDKQEFQESKTAVLDFLDDLIGV ERGTTQRNAGAAA >Mature_172_residues SGPVLLQWNGEAFQPANRHWARECDKRFVVGEFYTLAEHNDRSMNSHRHYFAAVADAWRNLPEQYSGLPFAESAEHLRAY ALIKKGYCDTHTIVCSSKAEAKRLAAFIRPIDAFSAVDVKEATVTRYVAKSQSMKAMDKQEFQESKTAVLDFLDDLIGVE RGTTQRNAGAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19433; Mature: 19302
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGPVLLQWNGEAFQPANRHWARECDKRFVVGEFYTLAEHNDRSMNSHRHYFAAVADAWR CCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH NLPEQYSGLPFAESAEHLRAYALIKKGYCDTHTIVCSSKAEAKRLAAFIRPIDAFSAVDV CCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCH KEATVTRYVAKSQSMKAMDKQEFQESKTAVLDFLDDLIGVERGTTQRNAGAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure SGPVLLQWNGEAFQPANRHWARECDKRFVVGEFYTLAEHNDRSMNSHRHYFAAVADAWR CCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH NLPEQYSGLPFAESAEHLRAYALIKKGYCDTHTIVCSSKAEAKRLAAFIRPIDAFSAVDV CCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCH KEATVTRYVAKSQSMKAMDKQEFQESKTAVLDFLDDLIGVERGTTQRNAGAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA