| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397103
Identifier: 150397103
GI number: 150397103
Start: 1966225
End: 1967202
Strand: Reverse
Name: 150397103
Synonym: Smed_1901
Alternate gene names: NA
Gene position: 1967202-1966225 (Counterclockwise)
Preceding gene: 150397104
Following gene: 150397102
Centisome position: 52.02
GC content: 57.77
Gene sequence:
>978_bases ATGCCGATCTACGACTCAAAGGCAACAGGCAAAAAGAAATTGCTGCGCGTCCTTCTCGTATCGCTTACAGCTTTGGCGGT CCAGTCGGATGGAATTGCAGCAATGGCCGAGGTGTTGCCACAGATTTCCCAGCAGCAATCTCCTGCGATCCCGAATCAGA TCCTCATATCCAACAATGAGGAGTTGGCTGCCGACCCTCAAGCTCCCGTTCGATTTGATCTGTTGGATCCGGCGCAATAT GCATTGCAGGCCAAGGATTACGGGGGGCACCCCGCCTACGGCGCAGCGATTCTGGCGCGGGTATGCGCCGACTATTTCGA ATCTCGGAGCCATCACGACCAGGATCTGGCCGATGCCGCAAAACTGGAAAAAAGCGGCGACAGGAACTTCGAAGATCTTG TCGCCGCCACCGCTTTCAAGATTCGCACGATGGAGGTGCAGTGCAGCGGTGTCACCGCGGAAGACATCCGCAATTCCGGC GATTTGATGCGCGAAGCCGCGGCCGCGGGGGATGTCAATGCCAAGGGCATTGTCTTGTTCGAGGATTTCCGCGCCGTAGA TGCCGCCCGGGCCGAAGCCAAGCTTGCCAACAAGGCCTTCGACGTCGATCCCGCCGTTTACAAGGATTGGCTGAACGAAG CGGTGCATCTGACTGAACAGGGAAATCTGAGAGGCGCCCAGCTTGCCGCCTTGCTGACCGGCCTCAGCGCCTACGGGCAA AAAGACATGACTACATCGGCCATGTGGTCCATGGTCGCCCAACAATCCAAAGGGGAGGCATTCGATTCCGGCAAATTCTC TTTCGAGACGGAGCCATACAACGAACTGAGCGGTGCAGAAAGAGCCGCAGCCACCGAGCGCGCAAAGACTGTTTTTGATA GTTGTTGCAACCAGCCTTCGGCGCAAGCCCAGGAGAAGGCTGACAGGGTGATCGCCGCACCGGAGCGCGAGGAAATCGGA GAACTTCCGGCCCGCTGA
Upstream 100 bases:
>100_bases ACTGGCTGCCGACGTGAAATCTTGAATTGCATTTGTCCGTTCGAATCTTCGGCCGGCCCATTGAAAGCAGTGGGCTGGCG TCAAAATCCAAGGATAAAAA
Downstream 100 bases:
>100_bases ATCACGGATGCAGGCCGTTAGCCGCCTTCCGTTCTGACATTGCCAGCCCGTCTCTGTTCGCAGGGGCGGGTTTTCGCTTG AGGAGACCGCTGATGCACTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MPIYDSKATGKKKLLRVLLVSLTALAVQSDGIAAMAEVLPQISQQQSPAIPNQILISNNEELAADPQAPVRFDLLDPAQY ALQAKDYGGHPAYGAAILARVCADYFESRSHHDQDLADAAKLEKSGDRNFEDLVAATAFKIRTMEVQCSGVTAEDIRNSG DLMREAAAAGDVNAKGIVLFEDFRAVDAARAEAKLANKAFDVDPAVYKDWLNEAVHLTEQGNLRGAQLAALLTGLSAYGQ KDMTTSAMWSMVAQQSKGEAFDSGKFSFETEPYNELSGAERAAATERAKTVFDSCCNQPSAQAQEKADRVIAAPEREEIG ELPAR
Sequences:
>Translated_325_residues MPIYDSKATGKKKLLRVLLVSLTALAVQSDGIAAMAEVLPQISQQQSPAIPNQILISNNEELAADPQAPVRFDLLDPAQY ALQAKDYGGHPAYGAAILARVCADYFESRSHHDQDLADAAKLEKSGDRNFEDLVAATAFKIRTMEVQCSGVTAEDIRNSG DLMREAAAAGDVNAKGIVLFEDFRAVDAARAEAKLANKAFDVDPAVYKDWLNEAVHLTEQGNLRGAQLAALLTGLSAYGQ KDMTTSAMWSMVAQQSKGEAFDSGKFSFETEPYNELSGAERAAATERAKTVFDSCCNQPSAQAQEKADRVIAAPEREEIG ELPAR >Mature_324_residues PIYDSKATGKKKLLRVLLVSLTALAVQSDGIAAMAEVLPQISQQQSPAIPNQILISNNEELAADPQAPVRFDLLDPAQYA LQAKDYGGHPAYGAAILARVCADYFESRSHHDQDLADAAKLEKSGDRNFEDLVAATAFKIRTMEVQCSGVTAEDIRNSGD LMREAAAAGDVNAKGIVLFEDFRAVDAARAEAKLANKAFDVDPAVYKDWLNEAVHLTEQGNLRGAQLAALLTGLSAYGQK DMTTSAMWSMVAQQSKGEAFDSGKFSFETEPYNELSGAERAAATERAKTVFDSCCNQPSAQAQEKADRVIAAPEREEIGE LPAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35029; Mature: 34898
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIYDSKATGKKKLLRVLLVSLTALAVQSDGIAAMAEVLPQISQQQSPAIPNQILISNNE CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC ELAADPQAPVRFDLLDPAQYALQAKDYGGHPAYGAAILARVCADYFESRSHHDQDLADAA CCCCCCCCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH KLEKSGDRNFEDLVAATAFKIRTMEVQCSGVTAEDIRNSGDLMREAAAAGDVNAKGIVLF HHHHCCCCCHHHHHHHHHHHEEEEEEEECCCCHHHHHCHHHHHHHHHHCCCCCCCEEEEE EDFRAVDAARAEAKLANKAFDVDPAVYKDWLNEAVHLTEQGNLRGAQLAALLTGLSAYGQ HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC KDMTTSAMWSMVAQQSKGEAFDSGKFSFETEPYNELSGAERAAATERAKTVFDSCCNQPS CCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCC AQAQEKADRVIAAPEREEIGELPAR HHHHHHHHHEECCCCHHHHCCCCCC >Mature Secondary Structure PIYDSKATGKKKLLRVLLVSLTALAVQSDGIAAMAEVLPQISQQQSPAIPNQILISNNE CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC ELAADPQAPVRFDLLDPAQYALQAKDYGGHPAYGAAILARVCADYFESRSHHDQDLADAA CCCCCCCCCEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH KLEKSGDRNFEDLVAATAFKIRTMEVQCSGVTAEDIRNSGDLMREAAAAGDVNAKGIVLF HHHHCCCCCHHHHHHHHHHHEEEEEEEECCCCHHHHHCHHHHHHHHHHCCCCCCCEEEEE EDFRAVDAARAEAKLANKAFDVDPAVYKDWLNEAVHLTEQGNLRGAQLAALLTGLSAYGQ HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC KDMTTSAMWSMVAQQSKGEAFDSGKFSFETEPYNELSGAERAAATERAKTVFDSCCNQPS CCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCC AQAQEKADRVIAAPEREEIGELPAR HHHHHHHHHEECCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA