| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397082
Identifier: 150397082
GI number: 150397082
Start: 1950684
End: 1952780
Strand: Reverse
Name: 150397082
Synonym: Smed_1880
Alternate gene names: NA
Gene position: 1952780-1950684 (Counterclockwise)
Preceding gene: 150397084
Following gene: 150397080
Centisome position: 51.63
GC content: 60.9
Gene sequence:
>2097_bases ATGGCAGATGTCGCTACGCTCGGACTGCAGGTTGAAAGTGGCTCCGTCGAGAAGGGGGCCGACGCCCTCAATCAGCTGAC GGGAGCGGCCGCCCGCGCAGAAGCAGCCGCAAACGGGCTGTCTGGGGCAAATCGTGGAGCAACTGGTGCGGCTTCTGCTG CCGCAAAGGCTTACGCCGCCGAGGGGGCGGCCGCCGCGTCGGCATCGAAACAGATCGAGATGATGAACCGCGCGGCCAAT CAGAACCGCGCATCGTCGCGCGGCAATCTTGGAAATATAGCCGCTCAATTCCAAGACATTGCCGTCAGTGCGCAAATGGG GATGGGTCCGCTGCAAATTGCCCTTCAGCAAGGCACGCAGTTGGCCGCGGTGCTTTCATCCATGGAGAGGCCGGTCCAGG GACTAGGTGCGGCCTTTTTGTCGGTGCTCTCGCCTGTCAGTCTCCTTACGATCGGCATAATCGCGCTGGCAGCCGCTGGC CTGCAGACGGTTGATTGGGCAAAGCTCGCTCAATCGGCGCTGATCGCCTTGGCGGACGTTCTCGAAACGATCGCACCGTA CGCCGTCGCAGCTGCGGCGGCGCTAGCGTTGATCTATGCGCCCGCGATCGTTGGCGGCATCATCTCGTTGATCGCGCTGC TCGGTCGATTGGTAGTCCAGCTTGGTATTGTCGCGGGAGCTTTCATTCTGGCGAACCCTGCCGTCGCATTCGTCGCCGGT ATCACGGCGGCGATAGCGGCGGCCAACATCTTCCGCGACGAACTCGCACAGATCTTCGGGCGAGATATCGTGCAAGATGC CAAGAACGGCGTGAACTTTGTCATTGGTGCATTCGTTGGCGCATACGAAGCGATCAAAGCCACGTGGTCGCTGCTGCCGA GCGCACTTGGCGACATCGTGTATTCGACGGCTCAGAACGTGATTGATGGCATCGAGAGCATGGTACAGACCGCTATCGAC GCTTTGAACAATTTGACTAATAAATACGCACTATGGACCGCGTCCATCGGCAAGCCACTCAGTCCAGAAGCTTACAACAA TATGATCCTTGGACCGGTTGAGTTCGGCAGCATCAGCAATCCTTATAAAGGTTCGGCGGGTGCAGCGGCGAAAGCCGCCA AAGCGGCCTTTGCGGACGCCCAAGGCACTGACTTCGCCGGCGAGGGTCTCCGCATCATCGGCGAGTACGCGTCGACGGCG GCCGGAAAAATCAAGGAGCTCGTCAAGGGCCTCATCGAAGTCGACGAGAAATCGAAGAAGCGCACCGGCGGCAAGAGCGA GCAGGAGAAGTACGCCGACATCGTTGCAGGAGCCGAGCGCCAGATCGCAGCGCTTGAGGCGGAGCGTGATGCTATCGGGC TCACGGAGCAGGCGGCAGCCGCGCTTCGCTACGAGACGCAGCTTCTCAACGAGGCCCAGCAGCGCGGCATCTCCCTCACA GATGCACAGAAGAGCGAGCTTTCGTCCCTTGCACGGGTCATGGCCTCGATCGAGGAAGAGACCCGCCAGATGGGTGTCGC GCTCGATTTTGCTAAAGAAGTAACCGGAGGCTTCTTCGATGACTTCTTCGCGGGAATTGAGAACGGCAAATCGGTATGGG AGTCTTTCGGCGACGCGGCTTTGGGGGTGCTCGACCGCATCGCCGACAAACTGCTGAACGACGTCCTCGATGCCGTGTTT CAGGTCAGCGGCGCCGGCGCAGGGGCGGGCGGAGGAGGACTCCTCAGTTGGCTCTTCGGCGGGGGCCCAAAGGTGGACCC GTGGGCTGGGCTGCGCGGGTATGCGAACGGAACGAGCTCCGCTCGACCTGGCGTCGCATGGGTTGGTGAAAAGGGGCCGG AGCTCGTCCGTTTCAAGGGTGGCGAGGAGGTCATTCCGAACCATCACCTTCAACGACCGGCCAATGGGAACGTGGCGCCA TCGGGCGGTCAGCTAAACCAGAATGGGCCGCGCGAGATCATCCTTCGGGTGATTGCTGAGGAGGGGCCGATGTTCAGGCC CGTCATTCGGTCGGAGAGCCGAGGCGTCTCCGTCGAGACCGTAAAACAGTATGACGTGGCGAAGGCAAACATCTACCAAA ACGGCGAAGACCGCTAA
Upstream 100 bases:
>100_bases CTAGGGCTATCCACAAACTGAAGCCGACAACAATACGCATGGATCGTCCTCCGATTGAATCGGCATGACGATAGCCCACG TTCTTAAAAAAGGAAAAGCC
Downstream 100 bases:
>100_bases TCTTCGATGGATTTCCCGCCTTGGATCACGGTGAAGATGCTTTCGCCGCTCTTAGCCTTCCTCATTGATGTGAGGAATTC CTCCATTTCCTGCGCCATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 698; Mature: 697
Protein sequence:
>698_residues MADVATLGLQVESGSVEKGADALNQLTGAAARAEAAANGLSGANRGATGAASAAAKAYAAEGAAAASASKQIEMMNRAAN QNRASSRGNLGNIAAQFQDIAVSAQMGMGPLQIALQQGTQLAAVLSSMERPVQGLGAAFLSVLSPVSLLTIGIIALAAAG LQTVDWAKLAQSALIALADVLETIAPYAVAAAAALALIYAPAIVGGIISLIALLGRLVVQLGIVAGAFILANPAVAFVAG ITAAIAAANIFRDELAQIFGRDIVQDAKNGVNFVIGAFVGAYEAIKATWSLLPSALGDIVYSTAQNVIDGIESMVQTAID ALNNLTNKYALWTASIGKPLSPEAYNNMILGPVEFGSISNPYKGSAGAAAKAAKAAFADAQGTDFAGEGLRIIGEYASTA AGKIKELVKGLIEVDEKSKKRTGGKSEQEKYADIVAGAERQIAALEAERDAIGLTEQAAAALRYETQLLNEAQQRGISLT DAQKSELSSLARVMASIEEETRQMGVALDFAKEVTGGFFDDFFAGIENGKSVWESFGDAALGVLDRIADKLLNDVLDAVF QVSGAGAGAGGGGLLSWLFGGGPKVDPWAGLRGYANGTSSARPGVAWVGEKGPELVRFKGGEEVIPNHHLQRPANGNVAP SGGQLNQNGPREIILRVIAEEGPMFRPVIRSESRGVSVETVKQYDVAKANIYQNGEDR
Sequences:
>Translated_698_residues MADVATLGLQVESGSVEKGADALNQLTGAAARAEAAANGLSGANRGATGAASAAAKAYAAEGAAAASASKQIEMMNRAAN QNRASSRGNLGNIAAQFQDIAVSAQMGMGPLQIALQQGTQLAAVLSSMERPVQGLGAAFLSVLSPVSLLTIGIIALAAAG LQTVDWAKLAQSALIALADVLETIAPYAVAAAAALALIYAPAIVGGIISLIALLGRLVVQLGIVAGAFILANPAVAFVAG ITAAIAAANIFRDELAQIFGRDIVQDAKNGVNFVIGAFVGAYEAIKATWSLLPSALGDIVYSTAQNVIDGIESMVQTAID ALNNLTNKYALWTASIGKPLSPEAYNNMILGPVEFGSISNPYKGSAGAAAKAAKAAFADAQGTDFAGEGLRIIGEYASTA AGKIKELVKGLIEVDEKSKKRTGGKSEQEKYADIVAGAERQIAALEAERDAIGLTEQAAAALRYETQLLNEAQQRGISLT DAQKSELSSLARVMASIEEETRQMGVALDFAKEVTGGFFDDFFAGIENGKSVWESFGDAALGVLDRIADKLLNDVLDAVF QVSGAGAGAGGGGLLSWLFGGGPKVDPWAGLRGYANGTSSARPGVAWVGEKGPELVRFKGGEEVIPNHHLQRPANGNVAP SGGQLNQNGPREIILRVIAEEGPMFRPVIRSESRGVSVETVKQYDVAKANIYQNGEDR >Mature_697_residues ADVATLGLQVESGSVEKGADALNQLTGAAARAEAAANGLSGANRGATGAASAAAKAYAAEGAAAASASKQIEMMNRAANQ NRASSRGNLGNIAAQFQDIAVSAQMGMGPLQIALQQGTQLAAVLSSMERPVQGLGAAFLSVLSPVSLLTIGIIALAAAGL QTVDWAKLAQSALIALADVLETIAPYAVAAAAALALIYAPAIVGGIISLIALLGRLVVQLGIVAGAFILANPAVAFVAGI TAAIAAANIFRDELAQIFGRDIVQDAKNGVNFVIGAFVGAYEAIKATWSLLPSALGDIVYSTAQNVIDGIESMVQTAIDA LNNLTNKYALWTASIGKPLSPEAYNNMILGPVEFGSISNPYKGSAGAAAKAAKAAFADAQGTDFAGEGLRIIGEYASTAA GKIKELVKGLIEVDEKSKKRTGGKSEQEKYADIVAGAERQIAALEAERDAIGLTEQAAAALRYETQLLNEAQQRGISLTD AQKSELSSLARVMASIEEETRQMGVALDFAKEVTGGFFDDFFAGIENGKSVWESFGDAALGVLDRIADKLLNDVLDAVFQ VSGAGAGAGGGGLLSWLFGGGPKVDPWAGLRGYANGTSSARPGVAWVGEKGPELVRFKGGEEVIPNHHLQRPANGNVAPS GGQLNQNGPREIILRVIAEEGPMFRPVIRSESRGVSVETVKQYDVAKANIYQNGEDR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71807; Mature: 71676
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADVATLGLQVESGSVEKGADALNQLTGAAARAEAAANGLSGANRGATGAASAAAKAYAA CCCHHEECEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH EGAAAASASKQIEMMNRAANQNRASSRGNLGNIAAQFQDIAVSAQMGMGPLQIALQQGTQ CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCHH LAAVLSSMERPVQGLGAAFLSVLSPVSLLTIGIIALAAAGLQTVDWAKLAQSALIALADV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LETIAPYAVAAAAALALIYAPAIVGGIISLIALLGRLVVQLGIVAGAFILANPAVAFVAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITAAIAAANIFRDELAQIFGRDIVQDAKNGVNFVIGAFVGAYEAIKATWSLLPSALGDIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSTAQNVIDGIESMVQTAIDALNNLTNKYALWTASIGKPLSPEAYNNMILGPVEFGSISN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHCCCEECCCCCCCCCC PYKGSAGAAAKAAKAAFADAQGTDFAGEGLRIIGEYASTAAGKIKELVKGLIEVDEKSKK CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTGGKSEQEKYADIVAGAERQIAALEAERDAIGLTEQAAAALRYETQLLNEAQQRGISLT CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC DAQKSELSSLARVMASIEEETRQMGVALDFAKEVTGGFFDDFFAGIENGKSVWESFGDAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHH LGVLDRIADKLLNDVLDAVFQVSGAGAGAGGGGLLSWLFGGGPKVDPWAGLRGYANGTSS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC ARPGVAWVGEKGPELVRFKGGEEVIPNHHLQRPANGNVAPSGGQLNQNGPREIILRVIAE CCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH EGPMFRPVIRSESRGVSVETVKQYDVAKANIYQNGEDR CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure ADVATLGLQVESGSVEKGADALNQLTGAAARAEAAANGLSGANRGATGAASAAAKAYAA CCHHEECEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH EGAAAASASKQIEMMNRAANQNRASSRGNLGNIAAQFQDIAVSAQMGMGPLQIALQQGTQ CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCHH LAAVLSSMERPVQGLGAAFLSVLSPVSLLTIGIIALAAAGLQTVDWAKLAQSALIALADV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LETIAPYAVAAAAALALIYAPAIVGGIISLIALLGRLVVQLGIVAGAFILANPAVAFVAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITAAIAAANIFRDELAQIFGRDIVQDAKNGVNFVIGAFVGAYEAIKATWSLLPSALGDIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSTAQNVIDGIESMVQTAIDALNNLTNKYALWTASIGKPLSPEAYNNMILGPVEFGSISN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHCCCEECCCCCCCCCC PYKGSAGAAAKAAKAAFADAQGTDFAGEGLRIIGEYASTAAGKIKELVKGLIEVDEKSKK CCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTGGKSEQEKYADIVAGAERQIAALEAERDAIGLTEQAAAALRYETQLLNEAQQRGISLT CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC DAQKSELSSLARVMASIEEETRQMGVALDFAKEVTGGFFDDFFAGIENGKSVWESFGDAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHH LGVLDRIADKLLNDVLDAVFQVSGAGAGAGGGGLLSWLFGGGPKVDPWAGLRGYANGTSS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC ARPGVAWVGEKGPELVRFKGGEEVIPNHHLQRPANGNVAPSGGQLNQNGPREIILRVIAE CCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH EGPMFRPVIRSESRGVSVETVKQYDVAKANIYQNGEDR CCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA