| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is 150397074
Identifier: 150397074
GI number: 150397074
Start: 1942785
End: 1943909
Strand: Reverse
Name: 150397074
Synonym: Smed_1872
Alternate gene names: NA
Gene position: 1943909-1942785 (Counterclockwise)
Preceding gene: 150397075
Following gene: 150397073
Centisome position: 51.4
GC content: 61.33
Gene sequence:
>1125_bases ATGACGATACCCTACGTAACGGGCACGGTTTCCGTGACCGCCGGCAGCGCCGTTGTCACCGGCTCCGGGACCGCCTGGCA AACGGCATTGATCGCAGGTGGGTTGTTCGGGCTCGACAGCAGCAACGGCAACCCGGTCCCGATCCTCTCCGTCGACAGCA ACACGCAGCTGACGCTGGCGAAGCCATGGCGGGGCACCACGGCGGCCGGGCAGGGGTACTGGATCGTTCGCGATACGGCC TACCTGCAACAACAGACCGTCAATGCCCAGGCGCTCTCGACCTATATCCAGCGGCTCGACAATGGAACGCTGGCTGCGCT AGCCGGGCTCGACCCCGCGGCGGACAAGTTCGCCTACTTCACCGGTGCAAACTCGGGCGCGCTGGCGGACATCAAGGCGA AGGGGCGGGACCTGCTTTCGTCGACGGGTGTGCTCGACGCCCTCCTGAAGCTTGGGCCTGTATGGGGTGGATCCGTGCGA TCCCCTGCTAACAGTGATGTCGGATTGGTCGATGGCGACCTCAACACGATCACCATTGCCGGCGTTTACACACTCTCGGG GAACTGGGCCAACACCTATGCCGGAGCCGCCTCGGTAGCCACGACAGGCACCCTCGTGGTTCTCCAGCGAAGCGCCAATG CCGTCTTTCAATATTTCTACCGAGACAACAACCAGGTCTTCAGAAGGAACACCGTCAACGGCGGCACAAGCTGGACGGAC TGGACGATTGTCGAGCTTCCGGTTGTAGGCACTGCCTCAAACTCGGCAGGCTTCCCGGCTGGCGCAATCATCGAGCGCGG CAGCAACGCCAACGGCGAGTACGTGCGGTTTGCGGACGGCACACAGATCTGTTGGGGAACTGGAACCATTAACGTCTCGA CTACCCTCAACAATCACTTCGGATCCAGCTCTGGAGCCTCGGTCACCGGCAACGCGCTAATCAGCTTCCCGGCGACGTTC TCGAACACAAACTACTCGGTAACGGTCTTCCCGACCTTCCGCGGCTTCACGGTGCTTGGCGCCTATTCGAAGAACGGTGC CAATGCCGCTGTCAGGATGGGTGTATCAGGCTCGACCGCAAACGATGTTCCCTATGAATGGTCAGCTTTCGGAAGGTGGT TCTGA
Upstream 100 bases:
>100_bases ACGATGCGGACAACCCCGGCACGTGGCGCACCGAAGGCGCCGATCACGTGCTCGGCATCCGCTACTACATTCTCGGCATC CCAGCTTAGGAACTCCTGAC
Downstream 100 bases:
>100_bases TGATAATTGATCTCTCTCCCCAGCGCCGCGATGACCTCCTGACGGTCACAAAGGCTGGTGACGCCCTCACGATCAACGGT ATGGCATTCGACTTCTCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTIPYVTGTVSVTAGSAVVTGSGTAWQTALIAGGLFGLDSSNGNPVPILSVDSNTQLTLAKPWRGTTAAGQGYWIVRDTA YLQQQTVNAQALSTYIQRLDNGTLAALAGLDPAADKFAYFTGANSGALADIKAKGRDLLSSTGVLDALLKLGPVWGGSVR SPANSDVGLVDGDLNTITIAGVYTLSGNWANTYAGAASVATTGTLVVLQRSANAVFQYFYRDNNQVFRRNTVNGGTSWTD WTIVELPVVGTASNSAGFPAGAIIERGSNANGEYVRFADGTQICWGTGTINVSTTLNNHFGSSSGASVTGNALISFPATF SNTNYSVTVFPTFRGFTVLGAYSKNGANAAVRMGVSGSTANDVPYEWSAFGRWF
Sequences:
>Translated_374_residues MTIPYVTGTVSVTAGSAVVTGSGTAWQTALIAGGLFGLDSSNGNPVPILSVDSNTQLTLAKPWRGTTAAGQGYWIVRDTA YLQQQTVNAQALSTYIQRLDNGTLAALAGLDPAADKFAYFTGANSGALADIKAKGRDLLSSTGVLDALLKLGPVWGGSVR SPANSDVGLVDGDLNTITIAGVYTLSGNWANTYAGAASVATTGTLVVLQRSANAVFQYFYRDNNQVFRRNTVNGGTSWTD WTIVELPVVGTASNSAGFPAGAIIERGSNANGEYVRFADGTQICWGTGTINVSTTLNNHFGSSSGASVTGNALISFPATF SNTNYSVTVFPTFRGFTVLGAYSKNGANAAVRMGVSGSTANDVPYEWSAFGRWF >Mature_373_residues TIPYVTGTVSVTAGSAVVTGSGTAWQTALIAGGLFGLDSSNGNPVPILSVDSNTQLTLAKPWRGTTAAGQGYWIVRDTAY LQQQTVNAQALSTYIQRLDNGTLAALAGLDPAADKFAYFTGANSGALADIKAKGRDLLSSTGVLDALLKLGPVWGGSVRS PANSDVGLVDGDLNTITIAGVYTLSGNWANTYAGAASVATTGTLVVLQRSANAVFQYFYRDNNQVFRRNTVNGGTSWTDW TIVELPVVGTASNSAGFPAGAIIERGSNANGEYVRFADGTQICWGTGTINVSTTLNNHFGSSSGASVTGNALISFPATFS NTNYSVTVFPTFRGFTVLGAYSKNGANAAVRMGVSGSTANDVPYEWSAFGRWF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38836; Mature: 38705
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIPYVTGTVSVTAGSAVVTGSGTAWQTALIAGGLFGLDSSNGNPVPILSVDSNTQLTLA CCCCEEEEEEEEECCCEEEECCCCHHHHHHHCCCEEEECCCCCCEEEEEEECCCCEEEEE KPWRGTTAAGQGYWIVRDTAYLQQQTVNAQALSTYIQRLDNGTLAALAGLDPAADKFAYF CCCCCCCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE TGANSGALADIKAKGRDLLSSTGVLDALLKLGPVWGGSVRSPANSDVGLVDGDLNTITIA ECCCCCEEEEEHHCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEE GVYTLSGNWANTYAGAASVATTGTLVVLQRSANAVFQYFYRDNNQVFRRNTVNGGTSWTD EEEEEECCCCCCCCCCCHHCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCC WTIVELPVVGTASNSAGFPAGAIIERGSNANGEYVRFADGTQICWGTGTINVSTTLNNHF EEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCEEEEECCCEEEEECCEEEEEEEECCCC GSSSGASVTGNALISFPATFSNTNYSVTVFPTFRGFTVLGAYSKNGANAAVRMGVSGSTA CCCCCCEEECCEEEEECCEECCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCC NDVPYEWSAFGRWF CCCCCCHHCCCCCC >Mature Secondary Structure TIPYVTGTVSVTAGSAVVTGSGTAWQTALIAGGLFGLDSSNGNPVPILSVDSNTQLTLA CCCEEEEEEEEECCCEEEECCCCHHHHHHHCCCEEEECCCCCCEEEEEEECCCCEEEEE KPWRGTTAAGQGYWIVRDTAYLQQQTVNAQALSTYIQRLDNGTLAALAGLDPAADKFAYF CCCCCCCCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE TGANSGALADIKAKGRDLLSSTGVLDALLKLGPVWGGSVRSPANSDVGLVDGDLNTITIA ECCCCCEEEEEHHCCHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCEEEEE GVYTLSGNWANTYAGAASVATTGTLVVLQRSANAVFQYFYRDNNQVFRRNTVNGGTSWTD EEEEEECCCCCCCCCCCHHCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCC WTIVELPVVGTASNSAGFPAGAIIERGSNANGEYVRFADGTQICWGTGTINVSTTLNNHF EEEEEEEEEEECCCCCCCCCCCEEECCCCCCCCEEEEECCCEEEEECCEEEEEEEECCCC GSSSGASVTGNALISFPATFSNTNYSVTVFPTFRGFTVLGAYSKNGANAAVRMGVSGSTA CCCCCCEEECCEEEEECCEECCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCC NDVPYEWSAFGRWF CCCCCCHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA