Click here to switch to the map view.

The map label for this gene is 150397042

Identifier: 150397042

GI number: 150397042

Start: 1917125

End: 1918558

Strand: Reverse

Name: 150397042

Synonym: Smed_1839

Alternate gene names: NA

Gene position: 1918558-1917125 (Counterclockwise)

Preceding gene: 150397044

Following gene: 150397041

Centisome position: 50.73

GC content: 64.02

Gene sequence:

>1434_bases
ATGAGCGCACCCCACCCATCCGAAAGAACCGTTGCGTTCGGCCTCTCCGCGATGCTCAGGGAACAGATGTCGCTGATGGC
GGAACTCCACCGGCGGCAACGAACGAATATCCTTTCCAGCTATCAGCCCTATGCCAAGCAGCGGGAGTTCCATGCCGCCG
GCGCAACCTTTCGCGAGAGGCTGTTCATGGCGGGCAACCAGCTCGGCAAGACGCTTGCGGGCGCGGCGGAGGCAGCCATG
CATCTGACCGGCCGCTATCCCGAATGGTGGCAGGGAAGACGGTTCGACCGGCCCGTCGCAATGCTCGCGGGCTCGGAGTC
CTATGAGCTGACACGCGACGGGGTGCAGCGGTTGCTGATAGGCCCGCCTCTGAATGAAGATGAATGGGGCACCGGATTCG
TGCCCAAGGCAACGATCCAGGCGACGACGCGCCGCTCCGGCGCTTCCGGGGCTCTCGACAGCGTAACGGTGCGGCACGTT
GCAGGCGGAGCCTCGACGCTGCTTTTCAAAGCTTACGAGCAGGGACGGGCCAAGTGGCAGGCCAACACGGTGGACTATGT
CTGGTTCGACGAGGAGCCGCCTGAGGACGTCTATTTCGAAGGGATCACCCGCACCAATGCGACCCGCGGTTCCATCGCCG
TGACCTTCACGCCGCTCAAGGGCCTGAGCGCCGTGGTGGCCAGATACCTGATGGAAAAGTCGGCGGACCGCGAGGTCACC
ACCATGACGATCGAGGATGCGGAACATTATACGCCCGAGGAGCGCCGGCGGATCATCGACAGCTATCCCGCCCATGAGCG
CGAGGCGCGCACCAAGGGCGTGCCGGCTCTCGGCTCCGGACGGATCTTTCCCGTAACCGAGGAGAGCATTCGTGCCGATC
CGTTCGATATACCGAAGCACTGGGTCCAGATCGGCGGACTCGACTTCGGCTGGGACCATCCTTTCGCGGCTGTCGGCTGC
GCCTGGGACCGGGATGCTGATGTCTTCTATGTGACCAAGCTCTATCGCGAGCGGGAATCGACGCCGATCATCCACGCGGC
AGCCCTCAAACCCTGGGGCGGAACCTTGCCCTGGGCGTGGCCCCATGACGGGTTGCAGCATGACAAGGGCAGCGGCGAGC
AACTGGCGGCCCAGTACCGGGCACAGGGGCTGGCGCTTCTTCCCGAAAGGGCGACCTTCGACGACGGCACGAACGGCGTC
GAAGCCGGGCTTTCCGACATGCTGCAGCGGATGCAGACCGGGCGCTGGAAGGTGTTTTCCACCTGCACGGAATGGTTCGA
GGAATTCCGCCTGTATCACCGCAAGGACGGCAGGATCGTCAAGGAGCGCGACGACCTCCTCGCCGCCTCGCGCTACGCGC
TGATGATGAAGCGCCATGCACGGGCAATCGGCGGCAACGCAAACTGGAAATTCACCGCCCGAAAGGTTCTCTGA

Upstream 100 bases:

>100_bases
ATCATGACCGAGCATTATTGAGCTTCTCGCCCCGCAGTCCAGCGGCGAACTCGCTGCTCCGCGTCTGCCGCCGCAATTTC
AAATAAAGACAGGATCACGG

Downstream 100 bases:

>100_bases
TGGCCGCAATGACCGATGAACGCCTGTCCGCACTCGTCAGCCAGCTGGTGAAGGACTGCGAAGACTATCGCGACGAGCTC
GCGGTCGATCGCATCAAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: Phage DNA Packaging

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MSAPHPSERTVAFGLSAMLREQMSLMAELHRRQRTNILSSYQPYAKQREFHAAGATFRERLFMAGNQLGKTLAGAAEAAM
HLTGRYPEWWQGRRFDRPVAMLAGSESYELTRDGVQRLLIGPPLNEDEWGTGFVPKATIQATTRRSGASGALDSVTVRHV
AGGASTLLFKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGSIAVTFTPLKGLSAVVARYLMEKSADREVT
TMTIEDAEHYTPEERRRIIDSYPAHEREARTKGVPALGSGRIFPVTEESIRADPFDIPKHWVQIGGLDFGWDHPFAAVGC
AWDRDADVFYVTKLYRERESTPIIHAAALKPWGGTLPWAWPHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGV
EAGLSDMLQRMQTGRWKVFSTCTEWFEEFRLYHRKDGRIVKERDDLLAASRYALMMKRHARAIGGNANWKFTARKVL

Sequences:

>Translated_477_residues
MSAPHPSERTVAFGLSAMLREQMSLMAELHRRQRTNILSSYQPYAKQREFHAAGATFRERLFMAGNQLGKTLAGAAEAAM
HLTGRYPEWWQGRRFDRPVAMLAGSESYELTRDGVQRLLIGPPLNEDEWGTGFVPKATIQATTRRSGASGALDSVTVRHV
AGGASTLLFKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGSIAVTFTPLKGLSAVVARYLMEKSADREVT
TMTIEDAEHYTPEERRRIIDSYPAHEREARTKGVPALGSGRIFPVTEESIRADPFDIPKHWVQIGGLDFGWDHPFAAVGC
AWDRDADVFYVTKLYRERESTPIIHAAALKPWGGTLPWAWPHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGV
EAGLSDMLQRMQTGRWKVFSTCTEWFEEFRLYHRKDGRIVKERDDLLAASRYALMMKRHARAIGGNANWKFTARKVL
>Mature_476_residues
SAPHPSERTVAFGLSAMLREQMSLMAELHRRQRTNILSSYQPYAKQREFHAAGATFRERLFMAGNQLGKTLAGAAEAAMH
LTGRYPEWWQGRRFDRPVAMLAGSESYELTRDGVQRLLIGPPLNEDEWGTGFVPKATIQATTRRSGASGALDSVTVRHVA
GGASTLLFKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGSIAVTFTPLKGLSAVVARYLMEKSADREVTT
MTIEDAEHYTPEERRRIIDSYPAHEREARTKGVPALGSGRIFPVTEESIRADPFDIPKHWVQIGGLDFGWDHPFAAVGCA
WDRDADVFYVTKLYRERESTPIIHAAALKPWGGTLPWAWPHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGVE
AGLSDMLQRMQTGRWKVFSTCTEWFEEFRLYHRKDGRIVKERDDLLAASRYALMMKRHARAIGGNANWKFTARKVL

Specific function: Unknown

COG id: COG5565

COG function: function code R; Bacteriophage terminase large (ATPase) subunit and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53727; Mature: 53596

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPHPSERTVAFGLSAMLREQMSLMAELHRRQRTNILSSYQPYAKQREFHAAGATFRER
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
LFMAGNQLGKTLAGAAEAAMHLTGRYPEWWQGRRFDRPVAMLAGSESYELTRDGVQRLLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEECCCCCHHHHHHHHHEEE
GPPLNEDEWGTGFVPKATIQATTRRSGASGALDSVTVRHVAGGASTLLFKAYEQGRAKWQ
CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEE
ANTVDYVWFDEEPPEDVYFEGITRTNATRGSIAVTFTPLKGLSAVVARYLMEKSADREVT
CCCEEEEEECCCCCCCCEECCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEE
TMTIEDAEHYTPEERRRIIDSYPAHEREARTKGVPALGSGRIFPVTEESIRADPFDIPKH
EEEECCCHHCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEECCHHHHCCCCCCCCHH
WVQIGGLDFGWDHPFAAVGCAWDRDADVFYVTKLYRERESTPIIHAAALKPWGGTLPWAW
HHHCCCCCCCCCCCHHHEECCCCCCCCEEHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
PHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGVEAGLSDMLQRMQTGRWKVFS
CCCCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
TCTEWFEEFRLYHRKDGRIVKERDDLLAASRYALMMKRHARAIGGNANWKFTARKVL
HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure 
SAPHPSERTVAFGLSAMLREQMSLMAELHRRQRTNILSSYQPYAKQREFHAAGATFRER
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHH
LFMAGNQLGKTLAGAAEAAMHLTGRYPEWWQGRRFDRPVAMLAGSESYELTRDGVQRLLI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEECCCCCHHHHHHHHHEEE
GPPLNEDEWGTGFVPKATIQATTRRSGASGALDSVTVRHVAGGASTLLFKAYEQGRAKWQ
CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCEEE
ANTVDYVWFDEEPPEDVYFEGITRTNATRGSIAVTFTPLKGLSAVVARYLMEKSADREVT
CCCEEEEEECCCCCCCCEECCEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEE
TMTIEDAEHYTPEERRRIIDSYPAHEREARTKGVPALGSGRIFPVTEESIRADPFDIPKH
EEEECCCHHCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEECCHHHHCCCCCCCCHH
WVQIGGLDFGWDHPFAAVGCAWDRDADVFYVTKLYRERESTPIIHAAALKPWGGTLPWAW
HHHCCCCCCCCCCCHHHEECCCCCCCCEEHHHHHHHHCCCCCEEEEEEECCCCCCCCCCC
PHDGLQHDKGSGEQLAAQYRAQGLALLPERATFDDGTNGVEAGLSDMLQRMQTGRWKVFS
CCCCCCCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
TCTEWFEEFRLYHRKDGRIVKERDDLLAASRYALMMKRHARAIGGNANWKFTARKVL
HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA