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The map label for this gene is glxA [H]

Identifier: 150396997

GI number: 150396997

Start: 1876418

End: 1877434

Strand: Direct

Name: glxA [H]

Synonym: Smed_1794

Alternate gene names: 150396997

Gene position: 1876418-1877434 (Clockwise)

Preceding gene: 150396994

Following gene: 150397000

Centisome position: 49.62

GC content: 60.18

Gene sequence:

>1017_bases
ATGGGAGGTTTTATGCACAAACCGCTGACGAAGAAGCGTTCGCTCGTCTTCTTTCTGGTGCCGCATTTTTCGATGCTACC
CTTCTCGGCCGCGATCGAAACACTGCGCATTGCCAATCGCATGCTCGGTTACGAGGCCTATACCTGGCGCCTCGCTTCGA
CCGACGGCCAGAAGGTCTATTCGTCGGCGGGCATTGCGCTCGAAGTCAACACCTCGCTTGCCGACGAGCGCAAATATCTC
GGTGGAGAGAACCGGCCCTCGATGGTTCTGGTCTGTTCGGGCGTCTATGTCGAAGACTTCCAGAACAAGTCGGTAAATGC
TTGGCTGCGCGAGGCCTACAACCGCGGCATTGCGGTCGGCAGTCTCTGTACCGGCGCCCACGTGCTCGCTTCGGCGGGCC
TGCTCACGGGCAAGCGCTGCGCGATCCATTGGGAAAACCTACCAGGCTTCTCCGAGAGCTTCCCTCAGGCCGACGTATAT
GCGGACCTCTATGAGATCGACGGCAACATCTATACCTGCGCCGGCGGCACCGCTTCGCTCGACATGATGCTGAACCTGAT
CGATCAGGATTTCGGCGAGAACCTCGTCAACCGCGTCTGCGAGCAGGCGCTGACCGACCGCGTGCGCGGGCCGCACGACC
GGCAGCGGCTGCCACTGAGAGCACGCCTTGGCGTTCAGAACTCCAAGGTCCTTTCGATCATCGAACTGATGGAAAGCAAC
CTTTCCGAACCGCTGTCCCTCCTTGAGATAGCGGAGAGCGCCGACCTGTCCCGCCGTCAGATCGAGCGGCTCTTCCGCCA
GGAAATGGGACGGTCGCCAGCCCGCTACTATCTCGAGATTCGCCTCGATCGCGCCCGGCATCTGCTTATCCAGTCTTCCA
TGCCGGTCGTGGAAGTCGCTGTGGCCTGCGGTTTCGTATCCGCTTCACATTTTTCGAAGTGTTATCGGGAGCTCTACAAC
CGCTCGCCGCAACAGGAACGCGCCGAACGCAAGCTGACGTTACAGATGGCGCGGTAG

Upstream 100 bases:

>100_bases
TGTCGCCCATGAGTGCGCAGCGGTTTGGGGCTGACGACTTGCACAGAAGCAATGATCTGAAGCGCGCGCATGAACTCGAT
TGATTGCAACGCCCTTCAGC

Downstream 100 bases:

>100_bases
ACCACGATGATTTAAGGCGGAAACGGCCTGAAATGTCCTCGTTTCCATTGAGTCAGGGCGAATCGCGCGGTCGTTCGTCC
AAAACAGGTAGGGAGCAGAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MGGFMHKPLTKKRSLVFFLVPHFSMLPFSAAIETLRIANRMLGYEAYTWRLASTDGQKVYSSAGIALEVNTSLADERKYL
GGENRPSMVLVCSGVYVEDFQNKSVNAWLREAYNRGIAVGSLCTGAHVLASAGLLTGKRCAIHWENLPGFSESFPQADVY
ADLYEIDGNIYTCAGGTASLDMMLNLIDQDFGENLVNRVCEQALTDRVRGPHDRQRLPLRARLGVQNSKVLSIIELMESN
LSEPLSLLEIAESADLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVAVACGFVSASHFSKCYRELYN
RSPQQERAERKLTLQMAR

Sequences:

>Translated_338_residues
MGGFMHKPLTKKRSLVFFLVPHFSMLPFSAAIETLRIANRMLGYEAYTWRLASTDGQKVYSSAGIALEVNTSLADERKYL
GGENRPSMVLVCSGVYVEDFQNKSVNAWLREAYNRGIAVGSLCTGAHVLASAGLLTGKRCAIHWENLPGFSESFPQADVY
ADLYEIDGNIYTCAGGTASLDMMLNLIDQDFGENLVNRVCEQALTDRVRGPHDRQRLPLRARLGVQNSKVLSIIELMESN
LSEPLSLLEIAESADLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVAVACGFVSASHFSKCYRELYN
RSPQQERAERKLTLQMAR
>Mature_337_residues
GGFMHKPLTKKRSLVFFLVPHFSMLPFSAAIETLRIANRMLGYEAYTWRLASTDGQKVYSSAGIALEVNTSLADERKYLG
GENRPSMVLVCSGVYVEDFQNKSVNAWLREAYNRGIAVGSLCTGAHVLASAGLLTGKRCAIHWENLPGFSESFPQADVYA
DLYEIDGNIYTCAGGTASLDMMLNLIDQDFGENLVNRVCEQALTDRVRGPHDRQRLPLRARLGVQNSKVLSIIELMESNL
SEPLSLLEIAESADLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVAVACGFVSASHFSKCYRELYNR
SPQQERAERKLTLQMAR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=108, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38010; Mature: 37879

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGFMHKPLTKKRSLVFFLVPHFSMLPFSAAIETLRIANRMLGYEAYTWRLASTDGQKVY
CCCCCCCCCCCCCCEEEEEECCCHHCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
SSAGIALEVNTSLADERKYLGGENRPSMVLVCSGVYVEDFQNKSVNAWLREAYNRGIAVG
HCCCEEEEECCCHHHHHHHCCCCCCCCEEEEECCCEEECCCCCCHHHHHHHHHHCCCEEH
SLCTGAHVLASAGLLTGKRCAIHWENLPGFSESFPQADVYADLYEIDGNIYTCAGGTASL
HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHEECCCEEEECCCCHHH
DMMLNLIDQDFGENLVNRVCEQALTDRVRGPHDRQRLPLRARLGVQNSKVLSIIELMESN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHCCCCCHHHHHHHHHHHHH
LSEPLSLLEIAESADLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVA
HCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHCCCCHHHHH
VACGFVSASHFSKCYRELYNRSPQQERAERKLTLQMAR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECC
>Mature Secondary Structure 
GGFMHKPLTKKRSLVFFLVPHFSMLPFSAAIETLRIANRMLGYEAYTWRLASTDGQKVY
CCCCCCCCCCCCCEEEEEECCCHHCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHH
SSAGIALEVNTSLADERKYLGGENRPSMVLVCSGVYVEDFQNKSVNAWLREAYNRGIAVG
HCCCEEEEECCCHHHHHHHCCCCCCCCEEEEECCCEEECCCCCCHHHHHHHHHHCCCEEH
SLCTGAHVLASAGLLTGKRCAIHWENLPGFSESFPQADVYADLYEIDGNIYTCAGGTASL
HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHEECCCEEEECCCCHHH
DMMLNLIDQDFGENLVNRVCEQALTDRVRGPHDRQRLPLRARLGVQNSKVLSIIELMESN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHCCCCCHHHHHHHHHHHHH
LSEPLSLLEIAESADLSRRQIERLFRQEMGRSPARYYLEIRLDRARHLLIQSSMPVVEVA
HCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHCCCCHHHHH
VACGFVSASHFSKCYRELYNRSPQQERAERKLTLQMAR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]