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The map label for this gene is pecT [H]

Identifier: 150396973

GI number: 150396973

Start: 1853804

End: 1854685

Strand: Direct

Name: pecT [H]

Synonym: Smed_1770

Alternate gene names: 150396973

Gene position: 1853804-1854685 (Clockwise)

Preceding gene: 150396971

Following gene: 150396974

Centisome position: 49.02

GC content: 64.74

Gene sequence:

>882_bases
ATGAGGCCAATCGATCCTGACCTTTTGCGTACCTTTCTGGCGTTCGCCGAAGGAGGCTCACTTGCGAGAGCCGCGATAGT
CGTCAACCGAACACCCTCTGCCGTAACGGCGCAGATGCAGCGATTGGAAGCTCTGATCGGTGAGCGGATTCTTGCACCCG
CCGGCCGCGGCCGGGTGCTTACGCCCATCGGCGAGGAGCTCGCCGCGCACGCCCGGCGCATTCTCGATGCGCATCGTGAC
GCGTGGCTCAGCCTCAGGGGCGCGCGCGCCGATGGACGAATTGTCCTCGGCAGCACTCAGGACTTCGCCGATACGATGCT
GCCCGGATTGCTGCGCCTCTTTGCGCGCTCTCATCCGCGCATTCGCCTGGACTTGAGAATCGGCCGATCGAAGGAACTGA
CGATCGCCTTCGATCAGGGCCAGATCGACATTCTTCTCGCCATGCGGCAGTCTGCTGCCGCAGACGAGTTGATCGTCCTC
CGAGAACAGATGCTTTGGCTTTGCTCCGACAGGGGCTTGGTAACGGACACGGATGAAGTGCCGCTAGCAGTCCTCGACGC
GCCCTGCGGCTTCCGCACGGCCGCCATATCCGTCCTCGAAGCCACCGGCCGTCGCTTTCGAATCGCGGCAACGAGTCCCA
GCCTGTCAGGTCTGCGCGCAGCGGTCCTGAGCAGCATCGCCGTCACCACCCGGACGGAACTGTTTCTCAGTGCCGGAATC
GGGCGCGCTCCTGAGCACCTCGCCCTGCCGTCGCTGCCGCCGGCCGAGTTCAGCCTGCGCCTGCGCACCCGTGCGGAGGA
GCCGGCAGCCGATCTTGCCGCCCTTCTGGCGGACGAACTGCGACAAGACTGGGCTCAGAGGCCAGAACGCATTTCAGCCT
GA

Upstream 100 bases:

>100_bases
GAGGCTCCTCTTTTTGAAATTGCCACCCCCGGAAATTGTCACTTCATTCACATCAAGAAAATTGAATTGTTTTTCAGCGA
TACTTTTGCAACATTGAATT

Downstream 100 bases:

>100_bases
TGCGCGCAATTCTGTTGCCAACACATAAAGATATCTTTATATCCTGTTACAGTTCCATTCAGCCGGGAAAAACCGATGTC
CGTTGCACCGCATGCTCTTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MRPIDPDLLRTFLAFAEGGSLARAAIVVNRTPSAVTAQMQRLEALIGERILAPAGRGRVLTPIGEELAAHARRILDAHRD
AWLSLRGARADGRIVLGSTQDFADTMLPGLLRLFARSHPRIRLDLRIGRSKELTIAFDQGQIDILLAMRQSAAADELIVL
REQMLWLCSDRGLVTDTDEVPLAVLDAPCGFRTAAISVLEATGRRFRIAATSPSLSGLRAAVLSSIAVTTRTELFLSAGI
GRAPEHLALPSLPPAEFSLRLRTRAEEPAADLAALLADELRQDWAQRPERISA

Sequences:

>Translated_293_residues
MRPIDPDLLRTFLAFAEGGSLARAAIVVNRTPSAVTAQMQRLEALIGERILAPAGRGRVLTPIGEELAAHARRILDAHRD
AWLSLRGARADGRIVLGSTQDFADTMLPGLLRLFARSHPRIRLDLRIGRSKELTIAFDQGQIDILLAMRQSAAADELIVL
REQMLWLCSDRGLVTDTDEVPLAVLDAPCGFRTAAISVLEATGRRFRIAATSPSLSGLRAAVLSSIAVTTRTELFLSAGI
GRAPEHLALPSLPPAEFSLRLRTRAEEPAADLAALLADELRQDWAQRPERISA
>Mature_293_residues
MRPIDPDLLRTFLAFAEGGSLARAAIVVNRTPSAVTAQMQRLEALIGERILAPAGRGRVLTPIGEELAAHARRILDAHRD
AWLSLRGARADGRIVLGSTQDFADTMLPGLLRLFARSHPRIRLDLRIGRSKELTIAFDQGQIDILLAMRQSAAADELIVL
REQMLWLCSDRGLVTDTDEVPLAVLDAPCGFRTAAISVLEATGRRFRIAATSPSLSGLRAAVLSSIAVTTRTELFLSAGI
GRAPEHLALPSLPPAEFSLRLRTRAEEPAADLAALLADELRQDWAQRPERISA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=290, Percent_Identity=31.0344827586207, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787806, Length=262, Percent_Identity=25.9541984732824, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31838; Mature: 31838

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPIDPDLLRTFLAFAEGGSLARAAIVVNRTPSAVTAQMQRLEALIGERILAPAGRGRVL
CCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
TPIGEELAAHARRILDAHRDAWLSLRGARADGRIVLGSTQDFADTMLPGLLRLFARSHPR
CCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
IRLDLRIGRSKELTIAFDQGQIDILLAMRQSAAADELIVLREQMLWLCSDRGLVTDTDEV
EEEEEEECCCCEEEEEECCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHCCCCCEECCCCC
PLAVLDAPCGFRTAAISVLEATGRRFRIAATSPSLSGLRAAVLSSIAVTTRTELFLSAGI
CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GRAPEHLALPSLPPAEFSLRLRTRAEEPAADLAALLADELRQDWAQRPERISA
CCCCCCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRPIDPDLLRTFLAFAEGGSLARAAIVVNRTPSAVTAQMQRLEALIGERILAPAGRGRVL
CCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
TPIGEELAAHARRILDAHRDAWLSLRGARADGRIVLGSTQDFADTMLPGLLRLFARSHPR
CCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
IRLDLRIGRSKELTIAFDQGQIDILLAMRQSAAADELIVLREQMLWLCSDRGLVTDTDEV
EEEEEEECCCCEEEEEECCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHCCCCCEECCCCC
PLAVLDAPCGFRTAAISVLEATGRRFRIAATSPSLSGLRAAVLSSIAVTTRTELFLSAGI
CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GRAPEHLALPSLPPAEFSLRLRTRAEEPAADLAALLADELRQDWAQRPERISA
CCCCCCCCCCCCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]