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The map label for this gene is cobB [H]

Identifier: 150396948

GI number: 150396948

Start: 1824839

End: 1826128

Strand: Reverse

Name: cobB [H]

Synonym: Smed_1745

Alternate gene names: 150396948

Gene position: 1826128-1824839 (Counterclockwise)

Preceding gene: 150396949

Following gene: 150396947

Centisome position: 48.29

GC content: 64.96

Gene sequence:

>1290_bases
ATGAAGGGGATCATGATTGCAGCCCCGAGTTCCGGCTCTGGCAAAACCACCGTGACCCTCGGCCTGATGCGGGCGCTGAA
GCGGCGCGGAGTATCGATCGCCCCTGGCAAGGCAGGACCGGATTATATCGATCCGGCGTTTCACACCGCTGCGAGCGGCA
AACCCTGCCTTAATTATGACCCCTGGGCCATGCGCCCCGGACTGCTCCTCGCCAACGCGGCGGCCGCGACTGAAGATGGC
TCCGTGCTCATCATGGAGGCGATGATGGGCCTTTATGATGGTGCCGCGGACGGCACCGGCGCCCCGGCGGACCTTGCCTC
GGCGCTCGGGCTTGCCGTGATCCTCGTCGTCGATTGTGCGCGCCTTTCGCATTCCGTGGCCGCGCTGGTCGGCGGTTATG
CCCGCCACCGCGACACCGTTCACGTCGCCGGCGTCATCCTAAACAGGGTCGGCAGCGACCGGCACGAGGGGATGTTGCGC
GATGCGCTTGCCGCAATCGCGATGCCGGTCTTCGGCGTGCTGCGGCAGGACGCTGCGCTGAAGCTGCCGGAACGCCACCT
GGGTCTGGTGCAGGCGGGCGAGCACGGCTCGCTTGAAGCCTTCATAGACAATGCGGCCACAAGCGTTGCATCGGCTTGCG
ATATCGATGCAATGCTTGGCGCCGCGACGCCCCTGACGAGGGGCGAGGGTGTCGAGGCGGCAAGGCCGGTCGGACAGCGG
ACAGCCGTTGCTCGCGACGTCGCCTTCGCCTTCTGCTACGAGCATCTTCTCGCAGGCTGGCGCGCGCAAGGATGTGAGAT
TACATTCTTTTCGCCTCTTGCCGACGAGGCACCGCATCCGGATGCCGATGCGATCTACCTCCCCGGCGGCTACCCCGAAC
TCCATGCCGAACGCCTCGCCAGTGCAGCGGCCTTCCGCATCGGCATGCACAAGGCCGCCAGCGCCGGGACGCGCATCTTC
GGAGAGTGCGGCGGCTACATGACGCTGGGTGAGGGGCTTGTTGCCGCGGATGGCGGGAAGTACGAGATGCTCGGGCTCTT
GCCGCTTGTCACCAGCTTTGCCGAACGCAAGCGACATCTTGGCTATCGGCACGTGACGCCGCTTGACGACGCATTCTTTC
GGGGACCGATGACGGCGCACGAATTTCACTATGCCACGATTGTTTCAGAGGGCACGGCCGAGCCTCTCTTCGCGGTAAGG
GATGCGGCAGGCGTTGATCTTGGCCGCGCCGGGCTCAGACGCCGGAACGTCGCCGGATCCTTCATGCACCTAATCGATCT
TTCGCAATGA

Upstream 100 bases:

>100_bases
AGGTCGTGCGGCTGCGCGCCTCACTCGATTGGCTCGGTGCGCTCGGAGGCCGAGCGCTTGCTCCCGATCCGTTTTCGAGC
CGCATTCTCCGGAATCCGGC

Downstream 100 bases:

>100_bases
CCATGCCCAATCCGATCACCCATGGCGGCGGAATCTCGGAAGCTGCAGCGCGCTTCGGCGGCAGGCCGGAGGACTGGCTT
GACCTCTCGACGGGCATCAA

Product: cobyrinic acid a,c-diamide synthase

Products: ADP; phosphate; Hydrogenobyrinic acid a,c diamide; L-glutamate

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MKGIMIAAPSSGSGKTTVTLGLMRALKRRGVSIAPGKAGPDYIDPAFHTAASGKPCLNYDPWAMRPGLLLANAAAATEDG
SVLIMEAMMGLYDGAADGTGAPADLASALGLAVILVVDCARLSHSVAALVGGYARHRDTVHVAGVILNRVGSDRHEGMLR
DALAAIAMPVFGVLRQDAALKLPERHLGLVQAGEHGSLEAFIDNAATSVASACDIDAMLGAATPLTRGEGVEAARPVGQR
TAVARDVAFAFCYEHLLAGWRAQGCEITFFSPLADEAPHPDADAIYLPGGYPELHAERLASAAAFRIGMHKAASAGTRIF
GECGGYMTLGEGLVAADGGKYEMLGLLPLVTSFAERKRHLGYRHVTPLDDAFFRGPMTAHEFHYATIVSEGTAEPLFAVR
DAAGVDLGRAGLRRRNVAGSFMHLIDLSQ

Sequences:

>Translated_429_residues
MKGIMIAAPSSGSGKTTVTLGLMRALKRRGVSIAPGKAGPDYIDPAFHTAASGKPCLNYDPWAMRPGLLLANAAAATEDG
SVLIMEAMMGLYDGAADGTGAPADLASALGLAVILVVDCARLSHSVAALVGGYARHRDTVHVAGVILNRVGSDRHEGMLR
DALAAIAMPVFGVLRQDAALKLPERHLGLVQAGEHGSLEAFIDNAATSVASACDIDAMLGAATPLTRGEGVEAARPVGQR
TAVARDVAFAFCYEHLLAGWRAQGCEITFFSPLADEAPHPDADAIYLPGGYPELHAERLASAAAFRIGMHKAASAGTRIF
GECGGYMTLGEGLVAADGGKYEMLGLLPLVTSFAERKRHLGYRHVTPLDDAFFRGPMTAHEFHYATIVSEGTAEPLFAVR
DAAGVDLGRAGLRRRNVAGSFMHLIDLSQ
>Mature_429_residues
MKGIMIAAPSSGSGKTTVTLGLMRALKRRGVSIAPGKAGPDYIDPAFHTAASGKPCLNYDPWAMRPGLLLANAAAATEDG
SVLIMEAMMGLYDGAADGTGAPADLASALGLAVILVVDCARLSHSVAALVGGYARHRDTVHVAGVILNRVGSDRHEGMLR
DALAAIAMPVFGVLRQDAALKLPERHLGLVQAGEHGSLEAFIDNAATSVASACDIDAMLGAATPLTRGEGVEAARPVGQR
TAVARDVAFAFCYEHLLAGWRAQGCEITFFSPLADEAPHPDADAIYLPGGYPELHAERLASAAAFRIGMHKAASAGTRIF
GECGGYMTLGEGLVAADGGKYEMLGLLPLVTSFAERKRHLGYRHVTPLDDAFFRGPMTAHEFHYATIVSEGTAEPLFAVR
DAAGVDLGRAGLRRRNVAGSFMHLIDLSQ

Specific function: Responsible for the amidation of carboxylic groups at position A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation [H]

COG id: COG1797

COG function: function code H; Cobyrinic acid a,c-diamide synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GATase cobBQ-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR004484
- InterPro:   IPR017929
- InterPro:   IPR011698 [H]

Pfam domain/function: PF01656 CbiA; PF07685 GATase_3 [H]

EC number: 6.3.5.9

Molecular weight: Translated: 44865; Mature: 44865

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGIMIAAPSSGSGKTTVTLGLMRALKRRGVSIAPGKAGPDYIDPAFHTAASGKPCLNYD
CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCC
PWAMRPGLLLANAAAATEDGSVLIMEAMMGLYDGAADGTGAPADLASALGLAVILVVDCA
CCCCCCCEEEECCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RLSHSVAALVGGYARHRDTVHVAGVILNRVGSDRHEGMLRDALAAIAMPVFGVLRQDAAL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
KLPERHLGLVQAGEHGSLEAFIDNAATSVASACDIDAMLGAATPLTRGEGVEAARPVGQR
CCCHHHCCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHCCCCHH
TAVARDVAFAFCYEHLLAGWRAQGCEITFFSPLADEAPHPDADAIYLPGGYPELHAERLA
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHH
SAAAFRIGMHKAASAGTRIFGECGGYMTLGEGLVAADGGKYEMLGLLPLVTSFAERKRHL
HHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHC
GYRHVTPLDDAFFRGPMTAHEFHYATIVSEGTAEPLFAVRDAAGVDLGRAGLRRRNVAGS
CCCCCCCCCHHHHCCCCCHHHEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
FMHLIDLSQ
HHHHHCCCC
>Mature Secondary Structure
MKGIMIAAPSSGSGKTTVTLGLMRALKRRGVSIAPGKAGPDYIDPAFHTAASGKPCLNYD
CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHCCCCCCCCCCC
PWAMRPGLLLANAAAATEDGSVLIMEAMMGLYDGAADGTGAPADLASALGLAVILVVDCA
CCCCCCCEEEECCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RLSHSVAALVGGYARHRDTVHVAGVILNRVGSDRHEGMLRDALAAIAMPVFGVLRQDAAL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
KLPERHLGLVQAGEHGSLEAFIDNAATSVASACDIDAMLGAATPLTRGEGVEAARPVGQR
CCCHHHCCEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHCCCCHH
TAVARDVAFAFCYEHLLAGWRAQGCEITFFSPLADEAPHPDADAIYLPGGYPELHAERLA
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHH
SAAAFRIGMHKAASAGTRIFGECGGYMTLGEGLVAADGGKYEMLGLLPLVTSFAERKRHL
HHHHHHHHHHHHHHCCCHHHHHCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHC
GYRHVTPLDDAFFRGPMTAHEFHYATIVSEGTAEPLFAVRDAAGVDLGRAGLRRRNVAGS
CCCCCCCCCHHHHCCCCCHHHEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
FMHLIDLSQ
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; hydrogenobyrinic acid; L-glutamine; H2O

Specific reaction: 2 ATP + hydrogenobyrinic acid + 2 L-glutamine + 2 H2O = 2 ADP + 2 phosphate + hydrogenobyrinic acid a,c-diamide + 2 L-glutamate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]