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The map label for this gene is aglR [H]

Identifier: 150396933

GI number: 150396933

Start: 1810668

End: 1811729

Strand: Direct

Name: aglR [H]

Synonym: Smed_1730

Alternate gene names: 150396933

Gene position: 1810668-1811729 (Clockwise)

Preceding gene: 150396932

Following gene: 150396936

Centisome position: 47.88

GC content: 61.68

Gene sequence:

>1062_bases
ATGGATGACAAGACGAAAAACAGAGCGACGATGGCGCCGCCGGCCGAAGGCGGCAGGCCGACACTGAAGACGATCGCTTT
CATGACCGGGCTCGGTATTACCACCGTCTCGCGCGCTCTGAAGGACGCTCCCGATATAGGCGCAGAAACCAAGGAACGCG
TGCGTCTCGTCGCAAAACAGATCGGCTATCAACCGAATCGCGCGGGCGTTCGCCTCAGAACGGGCAAGACGAATGTCATT
AGTCTGGTGCTGACTCTGGAGGAAGAGATCATGGGCATCACCAGCCCCATGGTCATCGGCATCACCGAAATCCTTGCCGG
CACCCAATATCACCTGGTTGTGACACCCTATAGTTCAACCAAGGATCCGCTCGGCCCCATCCGCTATATTCTCGACACCG
GCGCAGCCGATGGCGTGATCATTTCGCGTACCGAACCCAACGACCCGCGGGTAACGCTTTTAACCGAGCGTCACCTGCCC
TTCGCCACCCACGGGCGTACCGAGATGGGCCTGATCCATCCCTATCACGATTTCGACAATGAGCGCTTCGCCTACGAGGC
CGTCCGCAAGCTCGTCGACCGCGGCAGGCGGCGGCTGGTGCTCCTGGAGCCACCGCCGAATCTAACTTTCCACACCCATA
TGCGCACCGGCTTCGAGCGGGGGCTGCGGGATTTCGGAGCGGAATCGGTGAGCTTTCATCAGGTCAATATCGACTACAGC
CTCGTCGCCATTCGCGATGCGTTCGAGAGGCTTATGCACTCTTCGGATGCCCCGGACGGCATCGTTTCCGGCAGTGGATC
CGGCGCCATCGCGCTGATCGCGGGCGTCGAGGCGGCCGGCAAGAAGGTCGGCGATGACGCCGACATGGTCTCCAAAGTGC
CGAGCGATTTCCTGCGCTGGCTCCGGCCGGAGGTGATGACGATGTATGAGGATATCCGCATTGCCGGGCGCGAGCTCGCC
AAGGCAGTGATCGGCCGCATCGAAGGCCACCCGCCGGATAAGCTTCAGAGCCTCAGCCAGCCCGAATTCCAGCCGCCGGT
GGCGGGGCCGGCGAGATTGTAG

Upstream 100 bases:

>100_bases
CAGCAGCCGCAGTTCGTATATAAGGCGGGCGACGGAGCCTGCAGTTGAACAAGAGCGATGGGAGAGCCGTGATCCAGGAG
AGCGGATCGGCGTGACGGGC

Downstream 100 bases:

>100_bases
AGAAACCATCCGGATCAAGCCGTTGGGATGAAAAGAGAATCCGCGCCGCAGGCGCGGCAGGGCTCAAAACGCCGCGGCCG
GCCAGTACTTGTCGTCGGCA

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MDDKTKNRATMAPPAEGGRPTLKTIAFMTGLGITTVSRALKDAPDIGAETKERVRLVAKQIGYQPNRAGVRLRTGKTNVI
SLVLTLEEEIMGITSPMVIGITEILAGTQYHLVVTPYSSTKDPLGPIRYILDTGAADGVIISRTEPNDPRVTLLTERHLP
FATHGRTEMGLIHPYHDFDNERFAYEAVRKLVDRGRRRLVLLEPPPNLTFHTHMRTGFERGLRDFGAESVSFHQVNIDYS
LVAIRDAFERLMHSSDAPDGIVSGSGSGAIALIAGVEAAGKKVGDDADMVSKVPSDFLRWLRPEVMTMYEDIRIAGRELA
KAVIGRIEGHPPDKLQSLSQPEFQPPVAGPARL

Sequences:

>Translated_353_residues
MDDKTKNRATMAPPAEGGRPTLKTIAFMTGLGITTVSRALKDAPDIGAETKERVRLVAKQIGYQPNRAGVRLRTGKTNVI
SLVLTLEEEIMGITSPMVIGITEILAGTQYHLVVTPYSSTKDPLGPIRYILDTGAADGVIISRTEPNDPRVTLLTERHLP
FATHGRTEMGLIHPYHDFDNERFAYEAVRKLVDRGRRRLVLLEPPPNLTFHTHMRTGFERGLRDFGAESVSFHQVNIDYS
LVAIRDAFERLMHSSDAPDGIVSGSGSGAIALIAGVEAAGKKVGDDADMVSKVPSDFLRWLRPEVMTMYEDIRIAGRELA
KAVIGRIEGHPPDKLQSLSQPEFQPPVAGPARL
>Mature_353_residues
MDDKTKNRATMAPPAEGGRPTLKTIAFMTGLGITTVSRALKDAPDIGAETKERVRLVAKQIGYQPNRAGVRLRTGKTNVI
SLVLTLEEEIMGITSPMVIGITEILAGTQYHLVVTPYSSTKDPLGPIRYILDTGAADGVIISRTEPNDPRVTLLTERHLP
FATHGRTEMGLIHPYHDFDNERFAYEAVRKLVDRGRRRLVLLEPPPNLTFHTHMRTGFERGLRDFGAESVSFHQVNIDYS
LVAIRDAFERLMHSSDAPDGIVSGSGSGAIALIAGVEAAGKKVGDDADMVSKVPSDFLRWLRPEVMTMYEDIRIAGRELA
KAVIGRIEGHPPDKLQSLSQPEFQPPVAGPARL

Specific function: Probable regulatory protein for the binding-protein- dependent transport system for alpha-glucosides such as sucrose, maltose and trehalose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38719; Mature: 38719

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDKTKNRATMAPPAEGGRPTLKTIAFMTGLGITTVSRALKDAPDIGAETKERVRLVAKQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
IGYQPNRAGVRLRTGKTNVISLVLTLEEEIMGITSPMVIGITEILAGTQYHLVVTPYSST
HCCCCCCCCEEEECCCCEEEEEEEEHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCC
KDPLGPIRYILDTGAADGVIISRTEPNDPRVTLLTERHLPFATHGRTEMGLIHPYHDFDN
CCCCHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCC
ERFAYEAVRKLVDRGRRRLVLLEPPPNLTFHTHMRTGFERGLRDFGAESVSFHQVNIDYS
CHHHHHHHHHHHHCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEECCEE
LVAIRDAFERLMHSSDAPDGIVSGSGSGAIALIAGVEAAGKKVGDDADMVSKVPSDFLRW
EHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCHHHCCCCCCCHHHHHHCHHHHHHH
LRPEVMTMYEDIRIAGRELAKAVIGRIEGHPPDKLQSLSQPEFQPPVAGPARL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDDKTKNRATMAPPAEGGRPTLKTIAFMTGLGITTVSRALKDAPDIGAETKERVRLVAKQ
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
IGYQPNRAGVRLRTGKTNVISLVLTLEEEIMGITSPMVIGITEILAGTQYHLVVTPYSST
HCCCCCCCCEEEECCCCEEEEEEEEHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCCCC
KDPLGPIRYILDTGAADGVIISRTEPNDPRVTLLTERHLPFATHGRTEMGLIHPYHDFDN
CCCCHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCC
ERFAYEAVRKLVDRGRRRLVLLEPPPNLTFHTHMRTGFERGLRDFGAESVSFHQVNIDYS
CHHHHHHHHHHHHCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEECCEE
LVAIRDAFERLMHSSDAPDGIVSGSGSGAIALIAGVEAAGKKVGDDADMVSKVPSDFLRW
EHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECCHHHCCCCCCCHHHHHHCHHHHHHH
LRPEVMTMYEDIRIAGRELAKAVIGRIEGHPPDKLQSLSQPEFQPPVAGPARL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10400573; 11481430 [H]