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The map label for this gene is ycjP [C]

Identifier: 150396929

GI number: 150396929

Start: 1806909

End: 1807850

Strand: Reverse

Name: ycjP [C]

Synonym: Smed_1726

Alternate gene names: 150396929

Gene position: 1807850-1806909 (Counterclockwise)

Preceding gene: 150396930

Following gene: 150396928

Centisome position: 47.8

GC content: 59.55

Gene sequence:

>942_bases
GTGGATAGCATCGCAGACAACAACATGGTCGTGGGTTACGAGACTGCCCCCGCCAGCCTCATGGCCGGTGCGCGCGGCAG
GAAACCGCGCAGGACGCTCTCGCGCCGCAACATCATCGTCTACGGGACGTTGACCCTCGTGGCGCTTTATTATCTTCTGC
CGCTTTATGTGATGATCGTAACGTCGCTCAAGGGCATGCCCGAGATCCGCGTCGGCAACATCTTCGCGCCGCCGCTTGAG
ATCACCTTCGAACCCTGGGTGAAAGCCTGGTCAGAGGCCTGCACCGGCCTCAATTGCGACGGACTTTCCCGCGGCTTCTG
GAATTCGGTGCGCATTACGGTGCCGTCGGTGATCATTTCGATCGCCATCGCGTCGGTGAACGGTTACGCGCTCGCCAACT
GGCGCTTCAAAGGCGCGGATCTGTTCTTCACCATCCTCATCGTCGGTGCGTTCATCCCTTACCAGGTGATGATCTATCCG
ATCGTCATCGTGCTGAGGGAACTGGGCGTCTACGGAACGCTGACCGGCCTGATCATCGTGCACACGATTTTCGGCATGCC
GATCCTGACCCTGCTGTTCCGCAATTATTTCGCCGGGCTGCCGGAGGAACTCTTCAAGGCCGCGCGTGTCGACGGCGCAG
GGTTCTGGACGATCTACTTCAAGATCATGCTGCCGATGTCACTGCCGATCTTCGTGGTCGCCATGATCCTGCAGGTGACC
GGGATATGGAACGACTTCCTTTTCGGCGTGGTCTTCACCCGGCCGGAATACTACCCGATGACGGTCCAGCTCAACAATAT
CGTCAATTCGGTGCAGGGCGTGAAGGAATACAACGTCAACATGGCGGCCACGATCCTGACCGGCCTCGTGCCGTTGACGG
TCTACTTCGTCTCCGGCCGCCTGTTCGTTCGCGGCATCGCCGCCGGCGCAGTGAAAGGGTAA

Upstream 100 bases:

>100_bases
AACCTGGGCCAGGGCTTCGCCGCCTCTACCATGATGCTCGTGACCGTCGCGATCATCATCGTGCCGTGGGCCTATCTGGA
ATTTGGAGGAGGTCGTAAGC

Downstream 100 bases:

>100_bases
GGAAGCATGACAAGCGTATCTGTCAGGGATCTGTCGTTGAATTTCGGCGCTGTAACCGTGCTCGACAGGCTCAATCTCGA
CATTGATCACGGGGAGTTCC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDSIADNNMVVGYETAPASLMAGARGRKPRRTLSRRNIIVYGTLTLVALYYLLPLYVMIVTSLKGMPEIRVGNIFAPPLE
ITFEPWVKAWSEACTGLNCDGLSRGFWNSVRITVPSVIISIAIASVNGYALANWRFKGADLFFTILIVGAFIPYQVMIYP
IVIVLRELGVYGTLTGLIIVHTIFGMPILTLLFRNYFAGLPEELFKAARVDGAGFWTIYFKIMLPMSLPIFVVAMILQVT
GIWNDFLFGVVFTRPEYYPMTVQLNNIVNSVQGVKEYNVNMAATILTGLVPLTVYFVSGRLFVRGIAAGAVKG

Sequences:

>Translated_313_residues
MDSIADNNMVVGYETAPASLMAGARGRKPRRTLSRRNIIVYGTLTLVALYYLLPLYVMIVTSLKGMPEIRVGNIFAPPLE
ITFEPWVKAWSEACTGLNCDGLSRGFWNSVRITVPSVIISIAIASVNGYALANWRFKGADLFFTILIVGAFIPYQVMIYP
IVIVLRELGVYGTLTGLIIVHTIFGMPILTLLFRNYFAGLPEELFKAARVDGAGFWTIYFKIMLPMSLPIFVVAMILQVT
GIWNDFLFGVVFTRPEYYPMTVQLNNIVNSVQGVKEYNVNMAATILTGLVPLTVYFVSGRLFVRGIAAGAVKG
>Mature_313_residues
MDSIADNNMVVGYETAPASLMAGARGRKPRRTLSRRNIIVYGTLTLVALYYLLPLYVMIVTSLKGMPEIRVGNIFAPPLE
ITFEPWVKAWSEACTGLNCDGLSRGFWNSVRITVPSVIISIAIASVNGYALANWRFKGADLFFTILIVGAFIPYQVMIYP
IVIVLRELGVYGTLTGLIIVHTIFGMPILTLLFRNYFAGLPEELFKAARVDGAGFWTIYFKIMLPMSLPIFVVAMILQVT
GIWNDFLFGVVFTRPEYYPMTVQLNNIVNSVQGVKEYNVNMAATILTGLVPLTVYFVSGRLFVRGIAAGAVKG

Specific function: Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=289, Percent_Identity=27.681660899654, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789860, Length=285, Percent_Identity=24.9122807017544, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=25.3521126760563, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787368, Length=213, Percent_Identity=26.7605633802817, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34650; Mature: 34650

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSIADNNMVVGYETAPASLMAGARGRKPRRTLSRRNIIVYGTLTLVALYYLLPLYVMIV
CCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHH
TSLKGMPEIRVGNIFAPPLEITFEPWVKAWSEACTGLNCDGLSRGFWNSVRITVPSVIIS
HHHCCCCCEEECCEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHH
IAIASVNGYALANWRFKGADLFFTILIVGAFIPYQVMIYPIVIVLRELGVYGTLTGLIIV
HHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
HTIFGMPILTLLFRNYFAGLPEELFKAARVDGAGFWTIYFKIMLPMSLPIFVVAMILQVT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
GIWNDFLFGVVFTRPEYYPMTVQLNNIVNSVQGVKEYNVNMAATILTGLVPLTVYFVSGR
HHHHHHHHHHHEECCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
LFVRGIAAGAVKG
HHEEEHHHCCCCC
>Mature Secondary Structure
MDSIADNNMVVGYETAPASLMAGARGRKPRRTLSRRNIIVYGTLTLVALYYLLPLYVMIV
CCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHH
TSLKGMPEIRVGNIFAPPLEITFEPWVKAWSEACTGLNCDGLSRGFWNSVRITVPSVIIS
HHHCCCCCEEECCEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHH
IAIASVNGYALANWRFKGADLFFTILIVGAFIPYQVMIYPIVIVLRELGVYGTLTGLIIV
HHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
HTIFGMPILTLLFRNYFAGLPEELFKAARVDGAGFWTIYFKIMLPMSLPIFVVAMILQVT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
GIWNDFLFGVVFTRPEYYPMTVQLNNIVNSVQGVKEYNVNMAATILTGLVPLTVYFVSGR
HHHHHHHHHHHEECCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
LFVRGIAAGAVKG
HHEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]