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The map label for this gene is ydgJ [H]

Identifier: 150396925

GI number: 150396925

Start: 1801292

End: 1802425

Strand: Reverse

Name: ydgJ [H]

Synonym: Smed_1722

Alternate gene names: 150396925

Gene position: 1802425-1801292 (Counterclockwise)

Preceding gene: 150396926

Following gene: 150396924

Centisome position: 47.66

GC content: 60.32

Gene sequence:

>1134_bases
ATGACAAAAGAACTTGGCGTCGGCATCATCGGATGCGGCAATATTTCAACGACCTATTTCAAACTCGCTCCACTGTTCAA
GGGTATCAGGATCGCCGCATGCGCCGACATCAATCCGGTGGCGGCTGAAGCACGCGGCGCGGAATTCGACGTCACGGCGC
AGAGCATCGAAGCGCTTCTCGCCAACCCGGAAGCGGACATCGTCGTCAATCTGACGATTCCGGAGGCGCACTTCCCGGTT
TCAAAGGCCATTTTGGAAGCGGGCAAGCATGTCTATTCGGAAAAACCTTTGGTGCTCTCGCTGGAGCAGGGGGAAGAGCT
CAGGAGCATCGCCACGAGGAAAGGGCTGACTGTCGGCTGCGCACCGGACACTTTCCTCGGCGGTGCACACCAGCTCGCCC
GCAATTATATCGACGCGGGCAAGATCGGCCGGGTCACCTCCGGCACCTGTCACGTCATGAGCCCCGGTATGGAAATGTGG
CATCCGAATCCGGACTTCTTCTTCCTGCCGGGCGGCGGGCCGATCCTCGACCTCGGGCCCTATTACATTGCCAACCTGAT
CAACCTGATCGGACCGGTAAAACGCGTAGCTGCACTGTCCTCCATGGCAAGCACGACGCGGACCATCACCAGCGAGCCCC
GAAAGGGCGAGGTTATCCCGGTCAGGACACCTACCAACATACACGCCCTGCTCGAATTCCAGAACGGTGCGACCATCACC
CTCTCGGCAAGCTGGGATGTCTGGGCGCATCGCCATGCAAACATGGAGCTTTACGGCACAGATGGCTCACTCTTCGTTCC
GGATCCAAATTTTTTCGGGGGCACGGTCGAAGCCAGCGGACGGAACAAGGACATACAGCCGCTCGAAATGTGGGACCATC
CGTTCGCCGTCAACAACTGGGACCATCCGCTCGGCCCGATCGCCAATTATCGCGCGGCGGGGCTCGCGGACATGGCAGAT
GCGATCCTCAAGGGCCGCGACGCTCGCTGCTCGCTCGAACGCACGCTGCACGGGGTCGACGTGATGGTTTCGATCCTGAA
ATCGGGCGAGGAGGGAGGCTTCGTCACATTGTCGACGACCTGCACCCAGCCGGCGGCGCTTGGAATTGAAGAGGCGAGGG
CGCTCTTGCGCTGA

Upstream 100 bases:

>100_bases
GAAATATTTCATCGCCGAACACGACAATCCCAGCGATTTCCGGCGTTTCGCCAAGCGCTCGCTGGCCTCTATTCAATCCT
ACTGATCGACGGATAGGCCC

Downstream 100 bases:

>100_bases
AGTGGCGCCACGGCAAGTCCCTCCCCCTTGTGGGGAGGGGTTGGGCAGGGGTATTCACTCCCATCCCGAAACAAGGAACA
TTTACCCATGGCCTGGCAAC

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTKELGVGIIGCGNISTTYFKLAPLFKGIRIAACADINPVAAEARGAEFDVTAQSIEALLANPEADIVVNLTIPEAHFPV
SKAILEAGKHVYSEKPLVLSLEQGEELRSIATRKGLTVGCAPDTFLGGAHQLARNYIDAGKIGRVTSGTCHVMSPGMEMW
HPNPDFFFLPGGGPILDLGPYYIANLINLIGPVKRVAALSSMASTTRTITSEPRKGEVIPVRTPTNIHALLEFQNGATIT
LSASWDVWAHRHANMELYGTDGSLFVPDPNFFGGTVEASGRNKDIQPLEMWDHPFAVNNWDHPLGPIANYRAAGLADMAD
AILKGRDARCSLERTLHGVDVMVSILKSGEEGGFVTLSTTCTQPAALGIEEARALLR

Sequences:

>Translated_377_residues
MTKELGVGIIGCGNISTTYFKLAPLFKGIRIAACADINPVAAEARGAEFDVTAQSIEALLANPEADIVVNLTIPEAHFPV
SKAILEAGKHVYSEKPLVLSLEQGEELRSIATRKGLTVGCAPDTFLGGAHQLARNYIDAGKIGRVTSGTCHVMSPGMEMW
HPNPDFFFLPGGGPILDLGPYYIANLINLIGPVKRVAALSSMASTTRTITSEPRKGEVIPVRTPTNIHALLEFQNGATIT
LSASWDVWAHRHANMELYGTDGSLFVPDPNFFGGTVEASGRNKDIQPLEMWDHPFAVNNWDHPLGPIANYRAAGLADMAD
AILKGRDARCSLERTLHGVDVMVSILKSGEEGGFVTLSTTCTQPAALGIEEARALLR
>Mature_376_residues
TKELGVGIIGCGNISTTYFKLAPLFKGIRIAACADINPVAAEARGAEFDVTAQSIEALLANPEADIVVNLTIPEAHFPVS
KAILEAGKHVYSEKPLVLSLEQGEELRSIATRKGLTVGCAPDTFLGGAHQLARNYIDAGKIGRVTSGTCHVMSPGMEMWH
PNPDFFFLPGGGPILDLGPYYIANLINLIGPVKRVAALSSMASTTRTITSEPRKGEVIPVRTPTNIHALLEFQNGATITL
SASWDVWAHRHANMELYGTDGSLFVPDPNFFGGTVEASGRNKDIQPLEMWDHPFAVNNWDHPLGPIANYRAAGLADMADA
ILKGRDARCSLERTLHGVDVMVSILKSGEEGGFVTLSTTCTQPAALGIEEARALLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=209, Percent_Identity=27.7511961722488, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789848, Length=147, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 40394; Mature: 40262

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKELGVGIIGCGNISTTYFKLAPLFKGIRIAACADINPVAAEARGAEFDVTAQSIEALL
CCCCCCEEEEECCCCCCHHEEHHHHHCCCEEEEECCCCCHHHHCCCCEEEEEHHHHHHHH
ANPEADIVVNLTIPEAHFPVSKAILEAGKHVYSEKPLVLSLEQGEELRSIATRKGLTVGC
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEC
APDTFLGGAHQLARNYIDAGKIGRVTSGTCHVMSPGMEMWHPNPDFFFLPGGGPILDLGP
CCCHHCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHCCCCCCEEEECCCCCEEECCH
YYIANLINLIGPVKRVAALSSMASTTRTITSEPRKGEVIPVRTPTNIHALLEFQNGATIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEECCCCEEE
LSASWDVWAHRHANMELYGTDGSLFVPDPNFFGGTVEASGRNKDIQPLEMWDHPFAVNNW
EECCCCEEEEECCCEEEEECCCEEECCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCC
DHPLGPIANYRAAGLADMADAILKGRDARCSLERTLHGVDVMVSILKSGEEGGFVTLSTT
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
CTQPAALGIEEARALLR
CCCCHHCCHHHHHHHCC
>Mature Secondary Structure 
TKELGVGIIGCGNISTTYFKLAPLFKGIRIAACADINPVAAEARGAEFDVTAQSIEALL
CCCCCEEEEECCCCCCHHEEHHHHHCCCEEEEECCCCCHHHHCCCCEEEEEHHHHHHHH
ANPEADIVVNLTIPEAHFPVSKAILEAGKHVYSEKPLVLSLEQGEELRSIATRKGLTVGC
CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCEEEC
APDTFLGGAHQLARNYIDAGKIGRVTSGTCHVMSPGMEMWHPNPDFFFLPGGGPILDLGP
CCCHHCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHCCCCCCEEEECCCCCEEECCH
YYIANLINLIGPVKRVAALSSMASTTRTITSEPRKGEVIPVRTPTNIHALLEFQNGATIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEECCCCEEE
LSASWDVWAHRHANMELYGTDGSLFVPDPNFFGGTVEASGRNKDIQPLEMWDHPFAVNNW
EECCCCEEEEECCCEEEEECCCEEECCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCC
DHPLGPIANYRAAGLADMADAILKGRDARCSLERTLHGVDVMVSILKSGEEGGFVTLSTT
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
CTQPAALGIEEARALLR
CCCCHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]