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The map label for this gene is araQ [H]

Identifier: 150396904

GI number: 150396904

Start: 1779027

End: 1779872

Strand: Reverse

Name: araQ [H]

Synonym: Smed_1700

Alternate gene names: 150396904

Gene position: 1779872-1779027 (Counterclockwise)

Preceding gene: 150396905

Following gene: 150396903

Centisome position: 47.06

GC content: 57.33

Gene sequence:

>846_bases
ATGAGTGTTTTCGGTTCACCGCTTCGGCGCTCCGCAGCCCTGTCGGTCGTAATGACGGCCGTGGTGGCGATTGTCTTCTT
TTTTCCGATTTATTTCATGCTGGTTTCGGCGTTCAAATCGGAGCCAGAAATCATCTCGCAAAGGTTCAGCTTCCTGCCGC
TTGATTTCCAGGGCCTCGGACAGTTCCAGCGGGCAGCCGAAATCGCCCCTCTGGGGACTTATCTGTTCAATAGTTCGCTG
GTCGCGGCCATCAATGTCGGGGTGACGCTTCTGTTCAGCGCGCTTGCCGGATACGGCTTTGCCAAGTTCACCTTTCCCGG
GAGGACGGCACTCTTCCTCTTCGTTATCTCGACCATGATGATACCCACCCAAATTCTGGTGGTGCCGCTATTCGTCGAGA
TCAAGCTGCTGGGTTGGGTGAACTCCTACCAGGGTCTGATCGTGCCCGGCATGATGAATGCGTTCGGCGTCTTCATGATG
CGCCAATACGTCTACGACATACCCGATGAGATAATCGAGGCGGCGCGGGCCGATGGCGCGGGCGAGATCCGCATCTTCTT
CTTCATCGTGCTGCCGCTTCTCACGCCGGCTCTGGCCAGTCTGGCCATCATCATCTTCATCTGGAGCTGGGGAAATTTCC
TTTGGCCCTTGGTTGCGGTGACGCGTGAAGAGCTGGCCGTCCTGGCGACCGGGATTACCAGCTATACGCAGCCCTATCAG
CGCCAGCCCATGTGGGGAGCAGCCATGGCGGTGGCGACAATTGCCACGCTGCCACTGCTGGTGCTGTTCGTGTTTTTCCA
ACGATATCTTGTCAAAGGCCTGACGGCTGCGGCGGTCAAAGGTTAG

Upstream 100 bases:

>100_bases
TCCAATATTTCCGCATGGGCGAGGCCGCCGCCGCCTCGGTGCTTTTGTTTGCCGTGATCCTGCTTGTTACGGCGGCGCAG
CTATGGTTGGGACGACAGAA

Downstream 100 bases:

>100_bases
AGGAGCAATCCATGAGTGAGATCGTGCTGCGAGGGCTGCGCAAGTCCTTCGATTCCGTTGAAGTCATCAAAGAGTTCGAC
CTGACCATTGCCGATGGTGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSVFGSPLRRSAALSVVMTAVVAIVFFFPIYFMLVSAFKSEPEIISQRFSFLPLDFQGLGQFQRAAEIAPLGTYLFNSSL
VAAINVGVTLLFSALAGYGFAKFTFPGRTALFLFVISTMMIPTQILVVPLFVEIKLLGWVNSYQGLIVPGMMNAFGVFMM
RQYVYDIPDEIIEAARADGAGEIRIFFFIVLPLLTPALASLAIIIFIWSWGNFLWPLVAVTREELAVLATGITSYTQPYQ
RQPMWGAAMAVATIATLPLLVLFVFFQRYLVKGLTAAAVKG

Sequences:

>Translated_281_residues
MSVFGSPLRRSAALSVVMTAVVAIVFFFPIYFMLVSAFKSEPEIISQRFSFLPLDFQGLGQFQRAAEIAPLGTYLFNSSL
VAAINVGVTLLFSALAGYGFAKFTFPGRTALFLFVISTMMIPTQILVVPLFVEIKLLGWVNSYQGLIVPGMMNAFGVFMM
RQYVYDIPDEIIEAARADGAGEIRIFFFIVLPLLTPALASLAIIIFIWSWGNFLWPLVAVTREELAVLATGITSYTQPYQ
RQPMWGAAMAVATIATLPLLVLFVFFQRYLVKGLTAAAVKG
>Mature_280_residues
SVFGSPLRRSAALSVVMTAVVAIVFFFPIYFMLVSAFKSEPEIISQRFSFLPLDFQGLGQFQRAAEIAPLGTYLFNSSLV
AAINVGVTLLFSALAGYGFAKFTFPGRTALFLFVISTMMIPTQILVVPLFVEIKLLGWVNSYQGLIVPGMMNAFGVFMMR
QYVYDIPDEIIEAARADGAGEIRIFFFIVLPLLTPALASLAIIIFIWSWGNFLWPLVAVTREELAVLATGITSYTQPYQR
QPMWGAAMAVATIATLPLLVLFVFFQRYLVKGLTAAAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=256, Percent_Identity=30.46875, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787571, Length=267, Percent_Identity=29.5880149812734, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790464, Length=221, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30963; Mature: 30832

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVFGSPLRRSAALSVVMTAVVAIVFFFPIYFMLVSAFKSEPEIISQRFSFLPLDFQGLG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHH
QFQRAAEIAPLGTYLFNSSLVAAINVGVTLLFSALAGYGFAKFTFPGRTALFLFVISTMM
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
IPTQILVVPLFVEIKLLGWVNSYQGLIVPGMMNAFGVFMMRQYVYDIPDEIIEAARADGA
HHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
GEIRIFFFIVLPLLTPALASLAIIIFIWSWGNFLWPLVAVTREELAVLATGITSYTQPYQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
RQPMWGAAMAVATIATLPLLVLFVFFQRYLVKGLTAAAVKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]