BacMap

Definition	Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession	NC_009636
Length	3,781,904

Click here to switch to the map view.

The map label for this gene is znuC [H]

Identifier: 150396900

GI number: 150396900

Start: 1775117

End: 1776022

Strand: Reverse

Name: znuC [H]

Synonym: Smed_1696

Alternate gene names: 150396900

Gene position: 1776022-1775117 (Counterclockwise)

Preceding gene: 150396902

Following gene: 150396899

Centisome position: 46.96

GC content: 62.69

Gene sequence:

>906_bases
ATGCTGAATTTCCGCTCACCAGAAACGACGACCTTGGTCAGTCTCGCCAATGCGGGGGTGTGTCGAAACGGGAAATGGCT
CGTACGCGGCGTCGATTTTTCGATCAGCCGCGGGGAGATCGTTACCCTCATCGGTCCGAACGGGTCGGGCAAGACGACCA
CGGCGAAGACGGCGATCGGCGTGCTCAAACCGGATGAAGGTCATGTCGAGCGGGTTGCCGGCTTGCGGGTCGGCTACGTG
CCCCAGAAGCTTGCCGTGGACTGGACGCTGCCATTGACGGTCGAGCGGCTGATGACGTTGACCGGGCCGCTGAAGCGCCG
GGAAATCGATGAGGCGCTTGCCGCGACGGGCATGCTGCACATGGCGAAGGCTGAGGTCCAGCATCTTTCGGGTGGCGAAT
TCCAGCGGGCGCTTCTTGCGCGCGCGATCGCCCGCAAACCCGATCTTCTGGTCTTGGATGAGCCGGTGCAGGGCGTCGAT
TTTTCCGGCGAAATTGCGCTCTACGAACTGATCAAGCAGATCCGCAATCGCACCGGCTGCGGGATACTGCTCATTTCGCA
CGACCTCCATATCGTCATGGCGGAGACCGATACGGTCGTCTGCCTCAATGGCCACGTCTGCTGTCGCGGAACGCCGCAGG
TGGTGAGCCAGAGCCCGGAATACCTCAAGCTGTTCGGACGTCGGGCAGCCGGCGCTCTTGCCGTTTACAGTCACCACCAC
GACCATACGCACCTGCCGGACGGGCGTGTGCTGCACGCCGACGGCAGCATCACCGAGAGCTGTTTTCCCGACGACGGCCA
TCACCACGGTGAAGCCGGCAATATCCATGATCACGAACCCGACTGCGGCTGCGGCCACCACACGCGGCTGCAGGGCTACG
ACGGTGCGGAGAAGCGTGATGCTTGA

Upstream 100 bases:

>100_bases
ACCGGCGTTGCTTGAAACGGCACTGTTATGTTATTACATCAATTGCGTTATGCTATAACGTGTGCGATAGCCAGTGGCAA
CCACCAGCCGGATTTTTTTG

Downstream 100 bases:

>100_bases
CGATTTCTTCATCCGCGCGCTCGTCGCGGGAATAGGCATTGCCATGGTCGCGGGGCCGCTGGGTTGTTTCGTGATCTGGC
GGCGCATGGCCTATTTCGGC

Product: ABC transporter-like protein

Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLNFRSPETTTLVSLANAGVCRNGKWLVRGVDFSISRGEIVTLIGPNGSGKTTTAKTAIGVLKPDEGHVERVAGLRVGYV
PQKLAVDWTLPLTVERLMTLTGPLKRREIDEALAATGMLHMAKAEVQHLSGGEFQRALLARAIARKPDLLVLDEPVQGVD
FSGEIALYELIKQIRNRTGCGILLISHDLHIVMAETDTVVCLNGHVCCRGTPQVVSQSPEYLKLFGRRAAGALAVYSHHH
DHTHLPDGRVLHADGSITESCFPDDGHHHGEAGNIHDHEPDCGCGHHTRLQGYDGAEKRDA

Sequences:

>Translated_301_residues
MLNFRSPETTTLVSLANAGVCRNGKWLVRGVDFSISRGEIVTLIGPNGSGKTTTAKTAIGVLKPDEGHVERVAGLRVGYV
PQKLAVDWTLPLTVERLMTLTGPLKRREIDEALAATGMLHMAKAEVQHLSGGEFQRALLARAIARKPDLLVLDEPVQGVD
FSGEIALYELIKQIRNRTGCGILLISHDLHIVMAETDTVVCLNGHVCCRGTPQVVSQSPEYLKLFGRRAAGALAVYSHHH
DHTHLPDGRVLHADGSITESCFPDDGHHHGEAGNIHDHEPDCGCGHHTRLQGYDGAEKRDA
>Mature_301_residues
MLNFRSPETTTLVSLANAGVCRNGKWLVRGVDFSISRGEIVTLIGPNGSGKTTTAKTAIGVLKPDEGHVERVAGLRVGYV
PQKLAVDWTLPLTVERLMTLTGPLKRREIDEALAATGMLHMAKAEVQHLSGGEFQRALLARAIARKPDLLVLDEPVQGVD
FSGEIALYELIKQIRNRTGCGILLISHDLHIVMAETDTVVCLNGHVCCRGTPQVVSQSPEYLKLFGRRAAGALAVYSHHH
DHTHLPDGRVLHADGSITESCFPDDGHHHGEAGNIHDHEPDCGCGHHTRLQGYDGAEKRDA

Specific function: Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system [H]

COG id: COG1121

COG function: function code P; ABC-type Mn/Zn transport systems, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=204, Percent_Identity=29.9019607843137, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI27477115, Length=208, Percent_Identity=31.25, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI31657092, Length=209, Percent_Identity=33.0143540669856, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI6005701, Length=206, Percent_Identity=30.0970873786408, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI108773784, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI108773782, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI153792144, Length=226, Percent_Identity=26.9911504424779, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI150417984, Length=224, Percent_Identity=29.0178571428571, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI4557481, Length=203, Percent_Identity=28.0788177339901, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI157502203, Length=200, Percent_Identity=26.5, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI157502201, Length=200, Percent_Identity=26.5, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI27881506, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI69354671, Length=169, Percent_Identity=28.4023668639053, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI10947137, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI10947135, Length=169, Percent_Identity=28.4023668639053, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1788165, Length=247, Percent_Identity=49.7975708502024, Blast_Score=256, Evalue=1e-69,
Organism=Escherichia coli, GI1789593, Length=228, Percent_Identity=28.5087719298246, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=32.7868852459016, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=26.4462809917355, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87081709, Length=225, Percent_Identity=28.4444444444444, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1786803, Length=227, Percent_Identity=29.0748898678414, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787758, Length=205, Percent_Identity=30.7317073170732, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786345, Length=241, Percent_Identity=25.7261410788382, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787500, Length=217, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081791, Length=228, Percent_Identity=28.0701754385965, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790739, Length=206, Percent_Identity=29.6116504854369, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790544, Length=237, Percent_Identity=25.3164556962025, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789873, Length=203, Percent_Identity=30.0492610837438, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081834, Length=182, Percent_Identity=29.6703296703297, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=28.3185840707965, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788761, Length=227, Percent_Identity=27.3127753303965, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48995001, Length=212, Percent_Identity=30.6603773584906, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081782, Length=210, Percent_Identity=30, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=24.7899159663866, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788506, Length=235, Percent_Identity=25.531914893617, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789032, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789751, Length=205, Percent_Identity=25.3658536585366, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789991, Length=205, Percent_Identity=26.8292682926829, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786563, Length=199, Percent_Identity=29.1457286432161, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790190, Length=218, Percent_Identity=28.8990825688073, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787041, Length=172, Percent_Identity=29.0697674418605, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787759, Length=206, Percent_Identity=27.1844660194175, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786398, Length=216, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082267, Length=214, Percent_Identity=26.1682242990654, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786319, Length=181, Percent_Identity=28.1767955801105, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789890, Length=225, Percent_Identity=23.5555555555556, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789586, Length=234, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788225, Length=225, Percent_Identity=24.8888888888889, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994883, Length=207, Percent_Identity=26.5700483091787, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787712, Length=261, Percent_Identity=24.5210727969349, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786703, Length=201, Percent_Identity=29.3532338308458, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788053, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789962, Length=219, Percent_Identity=24.2009132420091, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786975, Length=207, Percent_Identity=24.6376811594203, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787112, Length=206, Percent_Identity=25.2427184466019, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=197, Percent_Identity=26.3959390862944, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17555318, Length=202, Percent_Identity=28.7128712871287, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=202, Percent_Identity=28.2178217821782, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=169, Percent_Identity=28.9940828402367, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=217, Percent_Identity=26.7281105990783, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555800, Length=195, Percent_Identity=28.2051282051282, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=234, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569081, Length=202, Percent_Identity=27.2277227722772, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=222, Percent_Identity=26.5765765765766, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=220, Percent_Identity=30, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6320296, Length=188, Percent_Identity=29.2553191489362, Blast_Score=79, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24641342, Length=202, Percent_Identity=31.1881188118812, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI85725262, Length=222, Percent_Identity=25.6756756756757, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574150, Length=191, Percent_Identity=31.9371727748691, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007328, Length=191, Percent_Identity=31.9371727748691, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24666092, Length=201, Percent_Identity=28.8557213930348, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24666836, Length=191, Percent_Identity=29.3193717277487, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24585091, Length=206, Percent_Identity=24.7572815533981, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571871, Length=186, Percent_Identity=28.494623655914, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24642252, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI18859989, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24650855, Length=155, Percent_Identity=30.9677419354839, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24650853, Length=158, Percent_Identity=31.0126582278481, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017882
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 32647; Mature: 32647

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFRSPETTTLVSLANAGVCRNGKWLVRGVDFSISRGEIVTLIGPNGSGKTTTAKTAIG
CCCCCCCCCEEEEEECCCCEECCCCEEEEEECEEECCCCEEEEECCCCCCCCEEHHHEEE
VLKPDEGHVERVAGLRVGYVPQKLAVDWTLPLTVERLMTLTGPLKRREIDEALAATGMLH
EECCCCCHHHHHHCCEECCCCHHEEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
MAKAEVQHLSGGEFQRALLARAIARKPDLLVLDEPVQGVDFSGEIALYELIKQIRNRTGC
HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
GILLISHDLHIVMAETDTVVCLNGHVCCRGTPQVVSQSPEYLKLFGRRAAGALAVYSHHH
EEEEEECCEEEEEECCCEEEEECCEEEECCCHHHHHCCHHHHHHHHHHCCCEEEEEECCC
DHTHLPDGRVLHADGSITESCFPDDGHHHGEAGNIHDHEPDCGCGHHTRLQGYDGAEKRD
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
A
C
>Mature Secondary Structure
MLNFRSPETTTLVSLANAGVCRNGKWLVRGVDFSISRGEIVTLIGPNGSGKTTTAKTAIG
CCCCCCCCCEEEEEECCCCEECCCCEEEEEECEEECCCCEEEEECCCCCCCCEEHHHEEE
VLKPDEGHVERVAGLRVGYVPQKLAVDWTLPLTVERLMTLTGPLKRREIDEALAATGMLH
EECCCCCHHHHHHCCEECCCCHHEEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
MAKAEVQHLSGGEFQRALLARAIARKPDLLVLDEPVQGVDFSGEIALYELIKQIRNRTGC
HHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
GILLISHDLHIVMAETDTVVCLNGHVCCRGTPQVVSQSPEYLKLFGRRAAGALAVYSHHH
EEEEEECCEEEEEECCCEEEEECCEEEECCCHHHHHCCHHHHHHHHHHCCCEEEEEECCC
DHTHLPDGRVLHADGSITESCFPDDGHHHGEAGNIHDHEPDCGCGHHTRLQGYDGAEKRD
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Zn (II) [Periplasm]; H2O; ATP [C]

Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]