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The map label for this gene is sohB [C]

Identifier: 150396862

GI number: 150396862

Start: 1746510

End: 1747415

Strand: Reverse

Name: sohB [C]

Synonym: Smed_1657

Alternate gene names: 150396862

Gene position: 1747415-1746510 (Counterclockwise)

Preceding gene: 150396863

Following gene: 150396861

Centisome position: 46.2

GC content: 64.13

Gene sequence:

>906_bases
ATGAGGAACTATCCCGAAATCGCCAGTCGGATGTTCGGCACGCCGCTGATGCTGCATCCGTCGAAGGGCGACATCATTGC
GCGGGCTTTCGGTCCGCGCGTGCTTGGCAGTCCGGACGCTCCGGCGCACGTCGCCGGCGGCGAAGAGATGGGGCTCCTTG
GCGATAAGCTGCGCAATGCGACCGACTGGGACGGAGAGCGCATCTACCCCGGTCCGGATCTTGTCGCGTCCGGCATTGCG
CTCATCGAGATCGAGGGCTCTCTCGTGAACAAGGGCAAGTGGATCGGCAAGTCCTGCGGCATGACCAGCTACGAAGCGAT
CGGAGTGCAGGTCCGGGATTGCATCGAGCGCGACGACATCAAGGCCGTCGTGTTCGAGGTCGACAGCTATGGCGGCGAGG
TGACCGGCGCCTTCGATTGCGCCGAGCTGATCTTCGAGCTTTCGCAGGTGAAGCCCACCATCGCGGTCCTCACGGACCAT
GCCTGCTCGGCCGGTTATCTGCTGGCCTCGCCCTGCCGTCAGCTGGTCATTCCGCAGACCGGTATTTGCGGCTCGATCGG
CGTCATCTCGATGCATGTCGATATGAGCGCCTGGCTCGCGAAGGAGGGCCTGAAGGTCACCATCCTGAAGGCCGGCGAGC
ACAAGGCCGACTTCAATCCTTACGAGGCCATCCCGGACGATGTGCTTCAGCAGGAACTCGCCGAGCTCGAGGAGCTTCGC
GTCGAATTCGCAGCCACCGTCGCGCGGTACCGCGCCGGCCGGCTGACACAGCAATCCGCTCTCGCCACTGAGGCGCGGGT
CTATCGCGGACAGAAGGCGGTTGATGCCGGCCTCGCCGACGCGGTTGCACGCCCTTCGCAGGTTCTCGAAGCCTTCGAAG
CTGAACTGAGCCGGACAGCCGGCTAA

Upstream 100 bases:

>100_bases
CAGCCGAGCCCGGCGACGAGGCCGAGGAAGAGGTCAACGGACGGACCTCGGCGCGGCGCCATCCTGCCGGCATCCCGAGG
ATTGCCAGAAGGAAAACGGC

Downstream 100 bases:

>100_bases
CCCCAACATCAACTGGAGACGACGAATGTCGAACTTGACGCGTAGCAGCGCGCTCACGCGGAGCGTGCTCGCCGCCATTA
GCGGCAAGAAGGGTTCCCGG

Product: peptidase S49

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MRNYPEIASRMFGTPLMLHPSKGDIIARAFGPRVLGSPDAPAHVAGGEEMGLLGDKLRNATDWDGERIYPGPDLVASGIA
LIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTGAFDCAELIFELSQVKPTIAVLTDH
ACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELR
VEFAATVARYRAGRLTQQSALATEARVYRGQKAVDAGLADAVARPSQVLEAFEAELSRTAG

Sequences:

>Translated_301_residues
MRNYPEIASRMFGTPLMLHPSKGDIIARAFGPRVLGSPDAPAHVAGGEEMGLLGDKLRNATDWDGERIYPGPDLVASGIA
LIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTGAFDCAELIFELSQVKPTIAVLTDH
ACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELR
VEFAATVARYRAGRLTQQSALATEARVYRGQKAVDAGLADAVARPSQVLEAFEAELSRTAG
>Mature_301_residues
MRNYPEIASRMFGTPLMLHPSKGDIIARAFGPRVLGSPDAPAHVAGGEEMGLLGDKLRNATDWDGERIYPGPDLVASGIA
LIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDIKAVVFEVDSYGGEVTGAFDCAELIFELSQVKPTIAVLTDH
ACSAGYLLASPCRQLVIPQTGICGSIGVISMHVDMSAWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELR
VEFAATVARYRAGRLTQQSALATEARVYRGQKAVDAGLADAVARPSQVLEAFEAELSRTAG

Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004635
- InterPro:   IPR002142 [H]

Pfam domain/function: PF01343 Peptidase_S49 [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 32278; Mature: 32278

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNYPEIASRMFGTPLMLHPSKGDIIARAFGPRVLGSPDAPAHVAGGEEMGLLGDKLRNA
CCCCHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
TDWDGERIYPGPDLVASGIALIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDI
CCCCCCEECCCHHHHHCCEEEEEECCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
KAVVFEVDSYGGEVTGAFDCAELIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQT
EEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCC
GICGSIGVISMHVDMSAWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELR
CCCCCCCEEEEEECHHHHHHHCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHH
VEFAATVARYRAGRLTQQSALATEARVYRGQKAVDAGLADAVARPSQVLEAFEAELSRTA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure
MRNYPEIASRMFGTPLMLHPSKGDIIARAFGPRVLGSPDAPAHVAGGEEMGLLGDKLRNA
CCCCHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
TDWDGERIYPGPDLVASGIALIEIEGSLVNKGKWIGKSCGMTSYEAIGVQVRDCIERDDI
CCCCCCEECCCHHHHHCCEEEEEECCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
KAVVFEVDSYGGEVTGAFDCAELIFELSQVKPTIAVLTDHACSAGYLLASPCRQLVIPQT
EEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCC
GICGSIGVISMHVDMSAWLAKEGLKVTILKAGEHKADFNPYEAIPDDVLQQELAELEELR
CCCCCCCEEEEEECHHHHHHHCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHH
VEFAATVARYRAGRLTQQSALATEARVYRGQKAVDAGLADAVARPSQVLEAFEAELSRTA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]