BacMap

Definition	Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession	NC_009636
Length	3,781,904

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The map label for this gene is ygcW [C]

Identifier: 150396773

GI number: 150396773

Start: 1657242

End: 1658063

Strand: Reverse

Name: ygcW [C]

Synonym: Smed_1563

Alternate gene names: 150396773

Gene position: 1658063-1657242 (Counterclockwise)

Preceding gene: 150396774

Following gene: 150396772

Centisome position: 43.84

GC content: 62.77

Gene sequence:

>822_bases
ATGAGCACGGACCACGCCCGTCTGGACGGGAAAATCGCAATTGTGACCGGCGGAACGCAAGGGCTCGGTGCCACGATTGC
CGCACTCTTAGCAGAGCGTGGCGCCGAAGGGCTCGTCATTTGCGGACGTAACGCGGCGAAGGGCGAGGCGAAAGCTGCCG
AGATCGCGGCTTCGACGGGTGCGAAGGTCATTTACGTACCGGCGGATCTCGAGCGAGTGGACGATGCCCGTGCCGTCGTT
GCGGCCTGCGATCGCAGCTTCGGCCGTGTCGATGCGCTGGTCAACGCCGCAGCAATCACGGATCGGGGTACGATCCTCGA
CACCAGCCCGGAGCTGTTCGACCGGATGTTCGCGGTCAATGTGCGGGCGCCGTTCTTCCTCATGCAGGAGGCGGTTAAAG
TAATGCGGCGCGAGAAAACCGAGGGCACGATCGTCAACATCGGTTCGATGTCGGCGAAGGCGGGCCAACCTTTCATAGCC
GCCTATTGTGCATCCAAGGGTGCGCTGGAAACCCTGACCAAAAACACGGCCTACGCGGTCCTGCGCAACCGGATCCGCGT
CAACGGTCTGAACATAGGCTGGATGGCATCCGAAGGCGAGGATCGGATCCAGCGCGAATATCACGGTGCGCCGGCGAATT
GGCTGGAGGCAGCGGCGTCGAGCCAACCCTTTGGTCGCCTCGTCGATCCCGCCGAAGTCGCACGCGCAAGCGCCTATCTT
TCATCGGCGGAATCCGGACTCATGACGGGTTCCGTCATCTGCTTCGATCAGTCGATCTGGGGCGCCTATGACGCCTCGCC
TCATCCGCAAGCGCCGCTCTGA

Upstream 100 bases:

>100_bases
GGACGCTCTTGCCTAACGGTTGGCGACGACGCAAAGCTACGGGAAGGGCGTGTCGCCGCCCGTTCGGAAGCCGGAATTGA
AGAGGGAGGAGGGATTTACC

Downstream 100 bases:

>100_bases
GGCCTTGCCCGCCGCCTTGCGTTTCGCTGGTACCTGTGGCCATATGACAGCCGTCAGGTGCCCGCTTTTATGTGGGAGAA
TCGGGAAGCCGGTGCAGTTC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSTDHARLDGKIAIVTGGTQGLGATIAALLAERGAEGLVICGRNAAKGEAKAAEIAASTGAKVIYVPADLERVDDARAVV
AACDRSFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEAVKVMRREKTEGTIVNIGSMSAKAGQPFIA
AYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHGAPANWLEAAASSQPFGRLVDPAEVARASAYL
SSAESGLMTGSVICFDQSIWGAYDASPHPQAPL

Sequences:

>Translated_273_residues
MSTDHARLDGKIAIVTGGTQGLGATIAALLAERGAEGLVICGRNAAKGEAKAAEIAASTGAKVIYVPADLERVDDARAVV
AACDRSFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEAVKVMRREKTEGTIVNIGSMSAKAGQPFIA
AYCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHGAPANWLEAAASSQPFGRLVDPAEVARASAYL
SSAESGLMTGSVICFDQSIWGAYDASPHPQAPL
>Mature_272_residues
STDHARLDGKIAIVTGGTQGLGATIAALLAERGAEGLVICGRNAAKGEAKAAEIAASTGAKVIYVPADLERVDDARAVVA
ACDRSFGRVDALVNAAAITDRGTILDTSPELFDRMFAVNVRAPFFLMQEAVKVMRREKTEGTIVNIGSMSAKAGQPFIAA
YCASKGALETLTKNTAYAVLRNRIRVNGLNIGWMASEGEDRIQREYHGAPANWLEAAASSQPFGRLVDPAEVARASAYLS
SAESGLMTGSVICFDQSIWGAYDASPHPQAPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=246, Percent_Identity=28.0487804878049, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI20149619, Length=170, Percent_Identity=37.6470588235294, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=27.4509803921569, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=27.6264591439689, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI7705925, Length=175, Percent_Identity=30.8571428571429, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=27.5193798449612, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI59889578, Length=214, Percent_Identity=27.5700934579439, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=27.1255060728745, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4758504, Length=264, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI83715985, Length=264, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI33667109, Length=203, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=28.968253968254, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923817, Length=272, Percent_Identity=25, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=29.0322580645161, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI87082160, Length=263, Percent_Identity=31.1787072243346, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790717, Length=254, Percent_Identity=29.5275590551181, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.9156626506024, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=30.9803921568627, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=30.8943089430894, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789378, Length=261, Percent_Identity=29.5019157088123, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=27.8225806451613, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=28.740157480315, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789057, Length=184, Percent_Identity=32.0652173913043, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786812, Length=264, Percent_Identity=27.6515151515151, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787905, Length=261, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI2367365, Length=253, Percent_Identity=28.4584980237154, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787526, Length=189, Percent_Identity=28.042328042328, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=32.3886639676113, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=31.4741035856574, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=250, Percent_Identity=31.6, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=32.1705426356589, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=31.5384615384615, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=29.6992481203008, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=250, Percent_Identity=28.4, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=243, Percent_Identity=29.2181069958848, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=250, Percent_Identity=29.2, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=28.5185185185185, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=251, Percent_Identity=27.8884462151394, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=254, Percent_Identity=29.1338582677165, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=201, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=248, Percent_Identity=29.4354838709677, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=27.3469387755102, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=28.8, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=262, Percent_Identity=28.6259541984733, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=27.710843373494, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=252, Percent_Identity=28.1746031746032, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=29.2134831460674, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=252, Percent_Identity=29.7619047619048, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=28.0632411067194, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=23.8805970149254, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=199, Percent_Identity=31.1557788944724, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=249, Percent_Identity=27.3092369477912, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=197, Percent_Identity=31.4720812182741, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=27.2357723577236, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=159, Percent_Identity=31.4465408805031, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=240, Percent_Identity=25.4166666666667, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=28.4644194756554, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=271, Percent_Identity=23.6162361623616, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=35.8870967741936, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI23397609, Length=265, Percent_Identity=34.7169811320755, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=35.0806451612903, Blast_Score=118, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=31.3253012048193, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=32.6612903225806, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24644337, Length=240, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24643142, Length=272, Percent_Identity=27.5735294117647, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=28.957528957529, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=32.1052631578947, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI161076933, Length=181, Percent_Identity=28.7292817679558, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24584748, Length=181, Percent_Identity=28.7292817679558, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28761; Mature: 28630

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDHARLDGKIAIVTGGTQGLGATIAALLAERGAEGLVICGRNAAKGEAKAAEIAASTG
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCC
AKVIYVPADLERVDDARAVVAACDRSFGRVDALVNAAAITDRGTILDTSPELFDRMFAVN
CEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCC
VRAPFFLMQEAVKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAV
CCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEHHCCCHHHHHHHHHHHHH
LRNRIRVNGLNIGWMASEGEDRIQREYHGAPANWLEAAASSQPFGRLVDPAEVARASAYL
HHHCEEECCEEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
SSAESGLMTGSVICFDQSIWGAYDASPHPQAPL
HHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STDHARLDGKIAIVTGGTQGLGATIAALLAERGAEGLVICGRNAAKGEAKAAEIAASTG
CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCC
AKVIYVPADLERVDDARAVVAACDRSFGRVDALVNAAAITDRGTILDTSPELFDRMFAVN
CEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHCC
VRAPFFLMQEAVKVMRREKTEGTIVNIGSMSAKAGQPFIAAYCASKGALETLTKNTAYAV
CCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEHHCCCHHHHHHHHHHHHH
LRNRIRVNGLNIGWMASEGEDRIQREYHGAPANWLEAAASSQPFGRLVDPAEVARASAYL
HHHCEEECCEEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
SSAESGLMTGSVICFDQSIWGAYDASPHPQAPL
HHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]