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The map label for this gene is 150396395

Identifier: 150396395

GI number: 150396395

Start: 1254252

End: 1255094

Strand: Direct

Name: 150396395

Synonym: Smed_1176

Alternate gene names: NA

Gene position: 1254252-1255094 (Clockwise)

Preceding gene: 150396394

Following gene: 150396396

Centisome position: 33.16

GC content: 62.63

Gene sequence:

>843_bases
GTGCAACAGTCCGATGACCAAATTCTCGCGACCCTGCGGGACACCGACCGCGATCGTTACCTGGCCTGTCTGCTTTCTCC
GGTAGAGAAGCGGCATTCGCTCGCGGCACTTTATGCCTTCTACGCCGAGATCGCCCGCGTCCGTGACATGGTCAAGGAGC
CGCTACCCGGTGAGATCCGGCTGCAGTGGTGGCGCGACATTCTCGAAAACGAAAAGTCGGACGGCGGGGGGCATCCTTTA
GCCGAAGCGCTCCTGCGATGCGTTCGCGAGCATCAGCTGCCTGTTCGCGTTCTGCAGGACATGATCGACGCACGCATTTT
CGATCTTTACGAGGATCCGATGCAGGACAGGGCGGCGCTCGAAGGCTATGCCGGTGAAACCGCATCGGCGCTCATCCAGC
TCTCTTCGCTGATCCTCGACCCGGTCAACGCGGCGGAATCCGCAGACGCGGCCGGTCATGCCGGTGTCGCTCAGACGATC
GCCGGTCTCCTGCTTCTTCTGCCTGTTCATGTCGGGCGTGGCCAGGTCTATTTGCCTGCTGAGATTTTGAGCGCAACGGG
GCTCGACAGGGAGGCTCTCCTTGCGGTGAACGACGAGGGCGCCGTCGAAAACGCCATCCGCGCATTTTGCGGTCTCGGCC
GCGATCATCTTGCCAGGGCGCGCAAGAGTGCCAGTTCGATTTCGGCCCGGAATTTCTCCGCCTTCATACCCGTCGCCCTG
GCCGAACCTGTGTTCGACCGTGCCGAGGCCGCCGGAGCGCGAATCCTTCGTCAGCCACTGCAGGCACCGCAATGGCAGCG
GCAATGGCGGATGTGGCGGGCGAGCCGGCGTCGGAAATTTTAG

Upstream 100 bases:

>100_bases
CACGGGTGCGGCGGTGCGAACCTACAACGTGATGCTGGCGGAATCGCGCGCCGTCGCCGCGGCATTGATCGCGGTGTGAG
GCGTTCCAAGGAAACTCGGC

Downstream 100 bases:

>100_bases
CGGATAGCCGTTCGGCCGTCATCCTGGCGCAAGTCTCCCATTGTTCTATCGGATTCCCGTCGCTCTCAAGGGACCCACGC
GATGCTTTGGTTACTGTTCC

Product: putative phytoene synthase

Products: diphosphate; prephytoene diphosphate

Alternate protein names: Phytoene Synthase; Phytoene Synthase Protein; Squalene; Squalene And Phytoene Synthases Superfamily; Phytoene/Squalene Synthetase-Like Protein

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MQQSDDQILATLRDTDRDRYLACLLSPVEKRHSLAALYAFYAEIARVRDMVKEPLPGEIRLQWWRDILENEKSDGGGHPL
AEALLRCVREHQLPVRVLQDMIDARIFDLYEDPMQDRAALEGYAGETASALIQLSSLILDPVNAAESADAAGHAGVAQTI
AGLLLLLPVHVGRGQVYLPAEILSATGLDREALLAVNDEGAVENAIRAFCGLGRDHLARARKSASSISARNFSAFIPVAL
AEPVFDRAEAAGARILRQPLQAPQWQRQWRMWRASRRRKF

Sequences:

>Translated_280_residues
MQQSDDQILATLRDTDRDRYLACLLSPVEKRHSLAALYAFYAEIARVRDMVKEPLPGEIRLQWWRDILENEKSDGGGHPL
AEALLRCVREHQLPVRVLQDMIDARIFDLYEDPMQDRAALEGYAGETASALIQLSSLILDPVNAAESADAAGHAGVAQTI
AGLLLLLPVHVGRGQVYLPAEILSATGLDREALLAVNDEGAVENAIRAFCGLGRDHLARARKSASSISARNFSAFIPVAL
AEPVFDRAEAAGARILRQPLQAPQWQRQWRMWRASRRRKF
>Mature_280_residues
MQQSDDQILATLRDTDRDRYLACLLSPVEKRHSLAALYAFYAEIARVRDMVKEPLPGEIRLQWWRDILENEKSDGGGHPL
AEALLRCVREHQLPVRVLQDMIDARIFDLYEDPMQDRAALEGYAGETASALIQLSSLILDPVNAAESADAAGHAGVAQTI
AGLLLLLPVHVGRGQVYLPAEILSATGLDREALLAVNDEGAVENAIRAFCGLGRDHLARARKSASSISARNFSAFIPVAL
AEPVFDRAEAAGARILRQPLQAPQWQRQWRMWRASRRRKF

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI124517691, Length=259, Percent_Identity=32.046332046332, Blast_Score=124, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.5.1.32

Molecular weight: Translated: 31109; Mature: 31109

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQSDDQILATLRDTDRDRYLACLLSPVEKRHSLAALYAFYAEIARVRDMVKEPLPGEIR
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LQWWRDILENEKSDGGGHPLAEALLRCVREHQLPVRVLQDMIDARIFDLYEDPMQDRAAL
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGYAGETASALIQLSSLILDPVNAAESADAAGHAGVAQTIAGLLLLLPVHVGRGQVYLPA
HCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHH
EILSATGLDREALLAVNDEGAVENAIRAFCGLGRDHLARARKSASSISARNFSAFIPVAL
HHHHHCCCCCHHEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
AEPVFDRAEAAGARILRQPLQAPQWQRQWRMWRASRRRKF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQQSDDQILATLRDTDRDRYLACLLSPVEKRHSLAALYAFYAEIARVRDMVKEPLPGEIR
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LQWWRDILENEKSDGGGHPLAEALLRCVREHQLPVRVLQDMIDARIFDLYEDPMQDRAAL
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGYAGETASALIQLSSLILDPVNAAESADAAGHAGVAQTIAGLLLLLPVHVGRGQVYLPA
HCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHH
EILSATGLDREALLAVNDEGAVENAIRAFCGLGRDHLARARKSASSISARNFSAFIPVAL
HHHHHCCCCCHHEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
AEPVFDRAEAAGARILRQPLQAPQWQRQWRMWRASRRRKF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: geranylgeranyl diphosphate

Specific reaction: 2 geranylgeranyl diphosphate = diphosphate + prephytoene diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA