Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 150396381

GI number: 150396381

Start: 1239702

End: 1240430

Strand: Direct

Name: scpB [H]

Synonym: Smed_1162

Alternate gene names: 150396381

Gene position: 1239702-1240430 (Clockwise)

Preceding gene: 150396380

Following gene: 150396382

Centisome position: 32.78

GC content: 61.59

Gene sequence:

>729_bases
GTGGCTGAAGCCCAGAAGATCCTGCCGGTGTTACCGGATGGAGAGGACGATGCCGAAGAAGCCTCGGTCGCGCCAAGGCT
CGAGCGGGAGGCAGAGCGGATCGCCGAAGCGCTCGTCTTCGCCTCCGCTCAACCGGTCTCGGAAACCTATATTGCCGGCC
GGCTGCCGCGTGGCACCGACGTCGGAAGCGTTATGGCGCGGCTCAAAAGCCGGTATGCAGGCAGCGGCGTAAACCTCGTT
CAAGTCGCGGACCATTGGGCCTTCCGTACCGCCGCGGATCTGTCCTTCGTCGTCCAGACGGAGGAGCAAGAAGTCCGAAA
GCTGTCGCGCGCCGCGCTGGAAGTGCTGGCGATCATCGCTTATCACCAGCCGGTGACACGCGCCGAGATCGAGGACATAC
GCGGCGTCCAGACCTCGAAGGGTACCTTGGACGTGCTGATGGAGGCAGGGTGGGTTCGGTTCCGCGGTCGCAGGCGATCG
CCAGGGCGTCCGGTGACTTTCGGGACGACGAGAGATTTTCTCGATCATTTCGGCCTCGAAGAGATCCGCGATCTTCCGGG
GATCGACGAGTTGAAGGGAGCCGGGCTTCTATCGGGACGTGTTCCCTCCAGCCTGAATATTCCGGTTCCCGTCGGCGAGG
ATGAATTTTCCGATAACGAGGATCCGATAACCCAGATGGACTTGGAAGAGCTGGGCCTCTTGACACCGAAGGCTGAAGAA
GACGATTAG

Upstream 100 bases:

>100_bases
CAATTGGAAATCCGCCAGGAGGGCGCTTTCACGCCGATTTATCTGCGGCGCGGACCAAATCCGATCGATGCGGCAACCCT
TGCGGAGATGGAGGCGGCGC

Downstream 100 bases:

>100_bases
AAATCCTGAGTATGGGTATCGTCTTTAGGTCTAGAGCACCGACGGCATGACGTCTTCGGGTCGAGGAATGCAAAGCATGG
CTTCAGATGCGCGCAACGGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MAEAQKILPVLPDGEDDAEEASVAPRLEREAERIAEALVFASAQPVSETYIAGRLPRGTDVGSVMARLKSRYAGSGVNLV
QVADHWAFRTAADLSFVVQTEEQEVRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLMEAGWVRFRGRRRS
PGRPVTFGTTRDFLDHFGLEEIRDLPGIDELKGAGLLSGRVPSSLNIPVPVGEDEFSDNEDPITQMDLEELGLLTPKAEE
DD

Sequences:

>Translated_242_residues
MAEAQKILPVLPDGEDDAEEASVAPRLEREAERIAEALVFASAQPVSETYIAGRLPRGTDVGSVMARLKSRYAGSGVNLV
QVADHWAFRTAADLSFVVQTEEQEVRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLMEAGWVRFRGRRRS
PGRPVTFGTTRDFLDHFGLEEIRDLPGIDELKGAGLLSGRVPSSLNIPVPVGEDEFSDNEDPITQMDLEELGLLTPKAEE
DD
>Mature_241_residues
AEAQKILPVLPDGEDDAEEASVAPRLEREAERIAEALVFASAQPVSETYIAGRLPRGTDVGSVMARLKSRYAGSGVNLVQ
VADHWAFRTAADLSFVVQTEEQEVRKLSRAALEVLAIIAYHQPVTRAEIEDIRGVQTSKGTLDVLMEAGWVRFRGRRRSP
GRPVTFGTTRDFLDHFGLEEIRDLPGIDELKGAGLLSGRVPSSLNIPVPVGEDEFSDNEDPITQMDLEELGLLTPKAEED
D

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 26534; Mature: 26403

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAQKILPVLPDGEDDAEEASVAPRLEREAERIAEALVFASAQPVSETYIAGRLPRGTD
CCCCHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
VGSVMARLKSRYAGSGVNLVQVADHWAFRTAADLSFVVQTEEQEVRKLSRAALEVLAIIA
HHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHH
YHQPVTRAEIEDIRGVQTSKGTLDVLMEAGWVRFRGRRRSPGRPVTFGTTRDFLDHFGLE
HCCCCHHHHHHHHCCCCCCCCHHHHHHHHCHHEECCCCCCCCCCEECCCHHHHHHHCCHH
EIRDLPGIDELKGAGLLSGRVPSSLNIPVPVGEDEFSDNEDPITQMDLEELGLLTPKAEE
HHHHCCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHCCCCCCCCC
DD
CC
>Mature Secondary Structure 
AEAQKILPVLPDGEDDAEEASVAPRLEREAERIAEALVFASAQPVSETYIAGRLPRGTD
CCCHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
VGSVMARLKSRYAGSGVNLVQVADHWAFRTAADLSFVVQTEEQEVRKLSRAALEVLAIIA
HHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHH
YHQPVTRAEIEDIRGVQTSKGTLDVLMEAGWVRFRGRRRSPGRPVTFGTTRDFLDHFGLE
HCCCCHHHHHHHHCCCCCCCCHHHHHHHHCHHEECCCCCCCCCCEECCCHHHHHHHCCHH
EIRDLPGIDELKGAGLLSGRVPSSLNIPVPVGEDEFSDNEDPITQMDLEELGLLTPKAEE
HHHHCCCCHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHCCCCCCCCC
DD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA