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The map label for this gene is bepC [H]

Identifier: 150396368

GI number: 150396368

Start: 1220069

End: 1221439

Strand: Direct

Name: bepC [H]

Synonym: Smed_1149

Alternate gene names: 150396368

Gene position: 1220069-1221439 (Clockwise)

Preceding gene: 150396367

Following gene: 150396369

Centisome position: 32.26

GC content: 63.82

Gene sequence:

>1371_bases
ATGGTGTCGATTGTCCGCAAAGCAGCCTTGTGGGCGGCTGTCTCGACCAGTGTGCTGCTCGCGCCCCATGCCGTTCTCGC
GGAGACGATTTTCGGGGCGATGGCCAAGGCCTATGCGAACAACCCGGATCTCAATGCCGCTCGCGCCGGGTTGCGGGCTA
CGGATGAAGGGGTTCCGATCGCGAAGTCAGGCTTTCGGCCGCAGATTTCCGCATCCGCGACGGGAACCCTGACGCGGCTC
GACCAGGAAAAAAGTCGGGCGCAAGACCTTCATGCCGGGCAGGTAGGCATCTCCATCACGCAGATGATCTTCGATGGATT
TCAGACGCTGAACAATGTCCGCGCCGCCGAAGCGGAGGTTTTTTCGAGTCGCGAAACGCTGAAGGCCAATGAGATTCAGA
TCCTGCTTTCGGCCGCGCAATCCTATGCTAACATCGCACGCGACCAGCAGATCGTTTCCATCCGCCGGCAGAACCTGGCC
TTCCTCAGGGAGCAGCTGAACGCAGCGCAGGCCCGCCTCGATGTGGGCGAGGGCACGCGGACCGATGTGAGCCAGGCGCA
GGCGGAACTCGCCAACGCTCAGTCGCTGCTCGTCGCTGCCGTCGCGCAGCTGAAGCAGAGCGAGGCGGTTTATGTGCAGA
TCGTCGGCGCGGCGCCGACCGGCATCAGGCAGCCGGGGCCTGCGACCAAGGCCATGCCAAGGTCGCTCGACCAGGCCGTT
GCGACCGGGCTGCGCGAAAACCCGCAAATCCTGGCGGCTCAATATGCCGTCGATTCGGCCGGCTATCAGGTCAAGTCCGC
CGAAGGCACGATGTTGCCCGGCGTCGTCCTCCAGGGCGCCGTAACGCGCAACACCGGAAATGCCGGTCAGGGGCTTGATG
ACACGACCGCGAGTGTCACGGCCCGGCTCGAAGTTCCGATTTATCAGGGCGGTGCGGAATATGGTCAGATTCGCCAAGCC
AAGGAAATACTCGGACAGCAGCGGATCCTCGTCGACTCTGCACGCGCTTCGGTGCAGCAGACCGTCGTCTCGGCCCATGC
GCAGCTCGAATCCGCGCTCGCCAGAATCCGAGCCAGCAGGTCGCAGATCTCCGCCGCGAACCTGGCGCTGGAGGGCGTGA
TCGAAGAACGCAAGGTCGGCCAGCGCACGACACTGGATGTGCTCGATGCACAGCAGGACGTTCTGGATGCGCAGGAGTCG
CTGGCCGGGGCGCAGCGTGATGCCGTGGTTGCCAGTTATGCCCTGCTCGCCGCAATGGGGCACCTCACCGTCAGGAGTCA
GGGCCTCCAGGTGGCTGAATACCGGGCCGAGGAACACTACGAGGCCGTCAAGGACAAGTGGTTCGGACTGCGTACCGTCG
ACGGACGCTAG

Upstream 100 bases:

>100_bases
GCGCGGAGCTTCACCGTAAGGTTTGTGCAGGCCGCCGAAAGGCGATTGGCCTGCTGAAATGCGGGGGTGGCAAATGCTGC
CTCGGTTGATCGGAGGGAAG

Downstream 100 bases:

>100_bases
ATTACGATGGTTTAGGCCGGTACGGCCTGAAATCATGAACATGACGCACGACGCCGCGTGGCCGATAAGGGACCGCGGCG
TTTCGCGTTACGGCGCAGTC

Product: TolC family type I secretion outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MVSIVRKAALWAAVSTSVLLAPHAVLAETIFGAMAKAYANNPDLNAARAGLRATDEGVPIAKSGFRPQISASATGTLTRL
DQEKSRAQDLHAGQVGISITQMIFDGFQTLNNVRAAEAEVFSSRETLKANEIQILLSAAQSYANIARDQQIVSIRRQNLA
FLREQLNAAQARLDVGEGTRTDVSQAQAELANAQSLLVAAVAQLKQSEAVYVQIVGAAPTGIRQPGPATKAMPRSLDQAV
ATGLRENPQILAAQYAVDSAGYQVKSAEGTMLPGVVLQGAVTRNTGNAGQGLDDTTASVTARLEVPIYQGGAEYGQIRQA
KEILGQQRILVDSARASVQQTVVSAHAQLESALARIRASRSQISAANLALEGVIEERKVGQRTTLDVLDAQQDVLDAQES
LAGAQRDAVVASYALLAAMGHLTVRSQGLQVAEYRAEEHYEAVKDKWFGLRTVDGR

Sequences:

>Translated_456_residues
MVSIVRKAALWAAVSTSVLLAPHAVLAETIFGAMAKAYANNPDLNAARAGLRATDEGVPIAKSGFRPQISASATGTLTRL
DQEKSRAQDLHAGQVGISITQMIFDGFQTLNNVRAAEAEVFSSRETLKANEIQILLSAAQSYANIARDQQIVSIRRQNLA
FLREQLNAAQARLDVGEGTRTDVSQAQAELANAQSLLVAAVAQLKQSEAVYVQIVGAAPTGIRQPGPATKAMPRSLDQAV
ATGLRENPQILAAQYAVDSAGYQVKSAEGTMLPGVVLQGAVTRNTGNAGQGLDDTTASVTARLEVPIYQGGAEYGQIRQA
KEILGQQRILVDSARASVQQTVVSAHAQLESALARIRASRSQISAANLALEGVIEERKVGQRTTLDVLDAQQDVLDAQES
LAGAQRDAVVASYALLAAMGHLTVRSQGLQVAEYRAEEHYEAVKDKWFGLRTVDGR
>Mature_456_residues
MVSIVRKAALWAAVSTSVLLAPHAVLAETIFGAMAKAYANNPDLNAARAGLRATDEGVPIAKSGFRPQISASATGTLTRL
DQEKSRAQDLHAGQVGISITQMIFDGFQTLNNVRAAEAEVFSSRETLKANEIQILLSAAQSYANIARDQQIVSIRRQNLA
FLREQLNAAQARLDVGEGTRTDVSQAQAELANAQSLLVAAVAQLKQSEAVYVQIVGAAPTGIRQPGPATKAMPRSLDQAV
ATGLRENPQILAAQYAVDSAGYQVKSAEGTMLPGVVLQGAVTRNTGNAGQGLDDTTASVTARLEVPIYQGGAEYGQIRQA
KEILGQQRILVDSARASVQQTVVSAHAQLESALARIRASRSQISAANLALEGVIEERKVGQRTTLDVLDAQQDVLDAQES
LAGAQRDAVVASYALLAAMGHLTVRSQGLQVAEYRAEEHYEAVKDKWFGLRTVDGR

Specific function: Involved in the efflux of toxic and relatively hydrophobic compounds. Influences survival inside the host [H]

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI87082199, Length=423, Percent_Identity=26.4775413711584, Blast_Score=89, Evalue=6e-19,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010130 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 48441; Mature: 48441

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSIVRKAALWAAVSTSVLLAPHAVLAETIFGAMAKAYANNPDLNAARAGLRATDEGVPI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCC
AKSGFRPQISASATGTLTRLDQEKSRAQDLHAGQVGISITQMIFDGFQTLNNVRAAEAEV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSSRETLKANEIQILLSAAQSYANIARDQQIVSIRRQNLAFLREQLNAAQARLDVGEGTR
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TDVSQAQAELANAQSLLVAAVAQLKQSEAVYVQIVGAAPTGIRQPGPATKAMPRSLDQAV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
ATGLRENPQILAAQYAVDSAGYQVKSAEGTMLPGVVLQGAVTRNTGNAGQGLDDTTASVT
HHCCCCCCCEEEHHHHHCCCCCEEECCCCCCCCHHHHHCCEECCCCCCCCCCCCCCHHEE
ARLEVPIYQGGAEYGQIRQAKEILGQQRILVDSARASVQQTVVSAHAQLESALARIRASR
EEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQISAANLALEGVIEERKVGQRTTLDVLDAQQDVLDAQESLAGAQRDAVVASYALLAAMG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
HLTVRSQGLQVAEYRAEEHYEAVKDKWFGLRTVDGR
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEECCCC
>Mature Secondary Structure
MVSIVRKAALWAAVSTSVLLAPHAVLAETIFGAMAKAYANNPDLNAARAGLRATDEGVPI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCC
AKSGFRPQISASATGTLTRLDQEKSRAQDLHAGQVGISITQMIFDGFQTLNNVRAAEAEV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSSRETLKANEIQILLSAAQSYANIARDQQIVSIRRQNLAFLREQLNAAQARLDVGEGTR
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
TDVSQAQAELANAQSLLVAAVAQLKQSEAVYVQIVGAAPTGIRQPGPATKAMPRSLDQAV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
ATGLRENPQILAAQYAVDSAGYQVKSAEGTMLPGVVLQGAVTRNTGNAGQGLDDTTASVT
HHCCCCCCCEEEHHHHHCCCCCEEECCCCCCCCHHHHHCCEECCCCCCCCCCCCCCHHEE
ARLEVPIYQGGAEYGQIRQAKEILGQQRILVDSARASVQQTVVSAHAQLESALARIRASR
EEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQISAANLALEGVIEERKVGQRTTLDVLDAQQDVLDAQESLAGAQRDAVVASYALLAAMG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
HLTVRSQGLQVAEYRAEEHYEAVKDKWFGLRTVDGR
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]