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The map label for this gene is 150396266

Identifier: 150396266

GI number: 150396266

Start: 1115326

End: 1116057

Strand: Direct

Name: 150396266

Synonym: Smed_1045

Alternate gene names: NA

Gene position: 1115326-1116057 (Clockwise)

Preceding gene: 150396259

Following gene: 150396267

Centisome position: 29.49

GC content: 59.15

Gene sequence:

>732_bases
ATGCAACAGGATCAGGCGGCAACATCACCGGATACCGATGGCGAAGGTGCTGCAAGCCGCGGCCGCGAACCCGCCTTCAA
TCTCCCGCGGGGACTGACAGCTATCCTCTTGTTTCTGGCCTTGGTTCACTTTTTGAGAACCTATGTTCTGCCGGCCGAAC
TCGACCGCGAGGTGATTCTCAATTTCGCCTTCTTACCGGTGCGCTACACGCTTCCGCTCGGCGAGCAGGGACTGGTTTGG
CTGTGGACGCCAGTGAGCTATTCCTTTCTGCACGGCAGTTGGGAGCATCTGATCTTCAATATATTCTGGATGATCGCGTT
CGGCGCGCCGGTGGTGAGGCGGATAGGCATTGGCCGACTGGCTGTGTTCTGGTGCCTGTCGGCAGCCGCCGCCGTCGGAT
TGCACGTTATATTCCACTGGGGAGAGATGGCCGTGGTGATCGGGGCTTCGGGAGTCGTTTCGGGTCTGATGGGGGCGGCG
GCGCGATTTGTATTTTCTCCGAGCGGTCGCATCAGCCGCCAGTTTGCCCATCTCAATAGGCGGCTTTCGTTTGCCGAGAC
GCTCACCAACCGGTCCGCGCTCGTCTTCACCGGCATCTGGTTCCTGACCAACTTTCTGGTGGGTTTTGGCATCTTGTCGA
TCGGAGGTGCGGGAAGCGTAGCCTGGGAGGCGCATATTGGCGGGTTTCTTTTCGGTTTCCTGCTGTTCGCCTTCTTCGAT
CCGCGCGGCTAA

Upstream 100 bases:

>100_bases
CTCATGAGTCAGGTCGTCCCGATCTAGAATCATCGTGAACCATGCGGGCGTTCGCTGCCGCCTCAGAACACCCACAGCGA
CCGGAGCGAAGAGGGCAGCC

Downstream 100 bases:

>100_bases
AGCCTCTCCCGTCTAAATGGCCCTCTGCAGAAGCCTTGATTTCCTGAGGTCGCTGGAGCACCATTCATAACGGCCGCCGA
ATAAGAGGCGGCCGCGGAAA

Product: rhomboid family protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Rhombiod Family Transmembrane Protein; Peptidase Protein; S54 Family Peptidase; Peptidase

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MQQDQAATSPDTDGEGAASRGREPAFNLPRGLTAILLFLALVHFLRTYVLPAELDREVILNFAFLPVRYTLPLGEQGLVW
LWTPVSYSFLHGSWEHLIFNIFWMIAFGAPVVRRIGIGRLAVFWCLSAAAAVGLHVIFHWGEMAVVIGASGVVSGLMGAA
ARFVFSPSGRISRQFAHLNRRLSFAETLTNRSALVFTGIWFLTNFLVGFGILSIGGAGSVAWEAHIGGFLFGFLLFAFFD
PRG

Sequences:

>Translated_243_residues
MQQDQAATSPDTDGEGAASRGREPAFNLPRGLTAILLFLALVHFLRTYVLPAELDREVILNFAFLPVRYTLPLGEQGLVW
LWTPVSYSFLHGSWEHLIFNIFWMIAFGAPVVRRIGIGRLAVFWCLSAAAAVGLHVIFHWGEMAVVIGASGVVSGLMGAA
ARFVFSPSGRISRQFAHLNRRLSFAETLTNRSALVFTGIWFLTNFLVGFGILSIGGAGSVAWEAHIGGFLFGFLLFAFFD
PRG
>Mature_243_residues
MQQDQAATSPDTDGEGAASRGREPAFNLPRGLTAILLFLALVHFLRTYVLPAELDREVILNFAFLPVRYTLPLGEQGLVW
LWTPVSYSFLHGSWEHLIFNIFWMIAFGAPVVRRIGIGRLAVFWCLSAAAAVGLHVIFHWGEMAVVIGASGVVSGLMGAA
ARFVFSPSGRISRQFAHLNRRLSFAETLTNRSALVFTGIWFLTNFLVGFGILSIGGAGSVAWEAHIGGFLFGFLLFAFFD
PRG

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26621; Mature: 26621

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQDQAATSPDTDGEGAASRGREPAFNLPRGLTAILLFLALVHFLRTYVLPAELDREVIL
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHHH
NFAFLPVRYTLPLGEQGLVWLWTPVSYSFLHGSWEHLIFNIFWMIAFGAPVVRRIGIGRL
HHHHEEEEEECCCCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCHHHHHHHCCHHH
AVFWCLSAAAAVGLHVIFHWGEMAVVIGASGVVSGLMGAAARFVFSPSGRISRQFAHLNR
HHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RLSFAETLTNRSALVFTGIWFLTNFLVGFGILSIGGAGSVAWEAHIGGFLFGFLLFAFFD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHC
PRG
CCC
>Mature Secondary Structure
MQQDQAATSPDTDGEGAASRGREPAFNLPRGLTAILLFLALVHFLRTYVLPAELDREVIL
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHHH
NFAFLPVRYTLPLGEQGLVWLWTPVSYSFLHGSWEHLIFNIFWMIAFGAPVVRRIGIGRL
HHHHEEEEEECCCCCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHCHHHHHHHCCHHH
AVFWCLSAAAAVGLHVIFHWGEMAVVIGASGVVSGLMGAAARFVFSPSGRISRQFAHLNR
HHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RLSFAETLTNRSALVFTGIWFLTNFLVGFGILSIGGAGSVAWEAHIGGFLFGFLLFAFFD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHC
PRG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA