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The map label for this gene is ycgB [H]

Identifier: 150396250

GI number: 150396250

Start: 1099550

End: 1101091

Strand: Direct

Name: ycgB [H]

Synonym: Smed_1029

Alternate gene names: 150396250

Gene position: 1099550-1101091 (Clockwise)

Preceding gene: 150396249

Following gene: 150396254

Centisome position: 29.07

GC content: 57.46

Gene sequence:

>1542_bases
ATGGGCACCGCCTCGAACCTTCTGTTCCAAAGTTCCGACTGGAATTTCGAAACGCTGGCGCACACCTATGATGCCATCGA
GGAGATCGCGCTGGGCGATCTCGGTCTCGACGTTTACCCCAATCAGCTCGAGATCATCTCCTCCGAGCAGATGCTGGATG
CCTATTCGTCCGTGGGCATGCCGCTCATGTACCAGCATTGGTCCTTTGGAAAGCGCTTCGTCTTCGAGGACCATCTCTAT
CGCAGAGGGCGGCGGGGGCTGGCTTACGAGCTGGTGATCAACTCCAATCCCTGCATCACCTATCTGATGGAGGAGAACAC
CATGGCCATGCAGGCCCTGGTGACCGCACATGCCGCCTTCGGCCACAATCATTTTTTCAAGAACAACTATCTTTTCCGGC
AGTGGACCGACGCCACCGCAATCCTCAGCTATATGGACTTCGCCAAGAAATACATTGCCAAATGCGAAGAACGGCACGGA
ACGCCGGCAGTGGAGGCGATCCTCGACTCTGCGCATGCGCTCATGGAGCAGGGCGTCTTCCGCTACCGACGGCCTCCGCG
CCTGTCGTCCGAAAAAGAACGGGAACGGATGCGCGAGAGGCTGGAATATGAAGAGCAGACCTATAGCGACCTGTGGAGAA
CACTTCCGCCATCAGGGGAAAACAACGATCCGACGCAATTGGAAAAGGAACTCGCGGAGCGGAAAAAATCACTGAACCTT
CCGGAAGAGAACCTGCTCTATTTCCTGGAAAAAACCAGCCTCATCCTTGAACCATGGCAACGCGAGATACTGCGGATCGT
CCGCGTGATCGCTCAGTACTTCTACCCGCAGCGGCAGACGAAGGTTATGAACGAGGGATGCGCCACCTTCGTCCACTACA
CCATCATGAACAAGCTTTTCGACCAGGGAAAGATAAGCGAAGGTGCAATGCTGGAGATCCTCCAGAGCCATACCAACGTC
GTTTTTCAGCCCGGCTTCGACGACCCCCGCTTTCCGGGAATCAATCCGTATGCGCTGGGATTTGCCATGATGCAGGATAT
CGAGCGGATCTGCGTCGCGCCTACGGCAGAGGACCGCGATTGGTTTCCCGACATCGCCGGCACCGGCAACTGGCGCGAAA
CGCTCCTCGACGCCTGGGCCAATCATCGCGACGAATCCTTCATCCTGCAGTTCCTGAGCCCGGCGCTGATCCGAAAGTTC
AGGCTCTTCCTCTTGACGGACGAAGCGGACGACAACTTCTGCGAAGTGGCATCCATCCACAACGAGCGCGGCTACGAAGC
GTTGCGCGGCGCACTCGCCCGCAGCTATGACATCGGGGTCAACCAGCCCGATATCCAGGTCATGGATGTCGATCTGCTCG
GAGACCGCCACCTGCGGCTGCAGCACAATGTGAAGGATGGAGTGCTGCTGGAGGAGAACAGCCGCGATTCCACTCTGCGC
CACGTCCGCCATCTCTGGGGATACGAAGTGAGCTTAGCGGGGGTCGATGCGGAAACCGGCGAAACGCTCTATGAGTGCTC
GACAGAGGAGCTTTCAGACTAG

Upstream 100 bases:

>100_bases
GATGACCCGCATCGCGAAACCGGCGGATATCTATCCCGTCTTCCGAAAACTCTTCGGCAAGCAGCCGGAGATGCAATTGC
GCAAGTAAAAGGGGATAGGG

Downstream 100 bases:

>100_bases
AGCGGGGTGAGGAAAGCGGTGTGCGGTTTTCCGCGCGCAAACCGCGTCTTAACCTATGGAATCGATCACGATGATTCTAG
GTCGATCCAACCTAAACATC

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 512

Protein sequence:

>513_residues
MGTASNLLFQSSDWNFETLAHTYDAIEEIALGDLGLDVYPNQLEIISSEQMLDAYSSVGMPLMYQHWSFGKRFVFEDHLY
RRGRRGLAYELVINSNPCITYLMEENTMAMQALVTAHAAFGHNHFFKNNYLFRQWTDATAILSYMDFAKKYIAKCEERHG
TPAVEAILDSAHALMEQGVFRYRRPPRLSSEKERERMRERLEYEEQTYSDLWRTLPPSGENNDPTQLEKELAERKKSLNL
PEENLLYFLEKTSLILEPWQREILRIVRVIAQYFYPQRQTKVMNEGCATFVHYTIMNKLFDQGKISEGAMLEILQSHTNV
VFQPGFDDPRFPGINPYALGFAMMQDIERICVAPTAEDRDWFPDIAGTGNWRETLLDAWANHRDESFILQFLSPALIRKF
RLFLLTDEADDNFCEVASIHNERGYEALRGALARSYDIGVNQPDIQVMDVDLLGDRHLRLQHNVKDGVLLEENSRDSTLR
HVRHLWGYEVSLAGVDAETGETLYECSTEELSD

Sequences:

>Translated_513_residues
MGTASNLLFQSSDWNFETLAHTYDAIEEIALGDLGLDVYPNQLEIISSEQMLDAYSSVGMPLMYQHWSFGKRFVFEDHLY
RRGRRGLAYELVINSNPCITYLMEENTMAMQALVTAHAAFGHNHFFKNNYLFRQWTDATAILSYMDFAKKYIAKCEERHG
TPAVEAILDSAHALMEQGVFRYRRPPRLSSEKERERMRERLEYEEQTYSDLWRTLPPSGENNDPTQLEKELAERKKSLNL
PEENLLYFLEKTSLILEPWQREILRIVRVIAQYFYPQRQTKVMNEGCATFVHYTIMNKLFDQGKISEGAMLEILQSHTNV
VFQPGFDDPRFPGINPYALGFAMMQDIERICVAPTAEDRDWFPDIAGTGNWRETLLDAWANHRDESFILQFLSPALIRKF
RLFLLTDEADDNFCEVASIHNERGYEALRGALARSYDIGVNQPDIQVMDVDLLGDRHLRLQHNVKDGVLLEENSRDSTLR
HVRHLWGYEVSLAGVDAETGETLYECSTEELSD
>Mature_512_residues
GTASNLLFQSSDWNFETLAHTYDAIEEIALGDLGLDVYPNQLEIISSEQMLDAYSSVGMPLMYQHWSFGKRFVFEDHLYR
RGRRGLAYELVINSNPCITYLMEENTMAMQALVTAHAAFGHNHFFKNNYLFRQWTDATAILSYMDFAKKYIAKCEERHGT
PAVEAILDSAHALMEQGVFRYRRPPRLSSEKERERMRERLEYEEQTYSDLWRTLPPSGENNDPTQLEKELAERKKSLNLP
EENLLYFLEKTSLILEPWQREILRIVRVIAQYFYPQRQTKVMNEGCATFVHYTIMNKLFDQGKISEGAMLEILQSHTNVV
FQPGFDDPRFPGINPYALGFAMMQDIERICVAPTAEDRDWFPDIAGTGNWRETLLDAWANHRDESFILQFLSPALIRKFR
LFLLTDEADDNFCEVASIHNERGYEALRGALARSYDIGVNQPDIQVMDVDLLGDRHLRLQHNVKDGVLLEENSRDSTLRH
VRHLWGYEVSLAGVDAETGETLYECSTEELSD

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=492, Percent_Identity=54.4715447154472, Blast_Score=551, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 59440; Mature: 59309

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTASNLLFQSSDWNFETLAHTYDAIEEIALGDLGLDVYPNQLEIISSEQMLDAYSSVGM
CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECHHHHHHHHHHCCC
PLMYQHWSFGKRFVFEDHLYRRGRRGLAYELVINSNPCITYLMEENTMAMQALVTAHAAF
CCEEHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHH
GHNHFFKNNYLFRQWTDATAILSYMDFAKKYIAKCEERHGTPAVEAILDSAHALMEQGVF
CCCCEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RYRRPPRLSSEKERERMRERLEYEEQTYSDLWRTLPPSGENNDPTQLEKELAERKKSLNL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
PEENLLYFLEKTSLILEPWQREILRIVRVIAQYFYPQRQTKVMNEGCATFVHYTIMNKLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DQGKISEGAMLEILQSHTNVVFQPGFDDPRFPGINPYALGFAMMQDIERICVAPTAEDRD
HCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
WFPDIAGTGNWRETLLDAWANHRDESFILQFLSPALIRKFRLFLLTDEADDNFCEVASIH
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHH
NERGYEALRGALARSYDIGVNQPDIQVMDVDLLGDRHLRLQHNVKDGVLLEENSRDSTLR
HHCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCEEEECCCCHHHHH
HVRHLWGYEVSLAGVDAETGETLYECSTEELSD
HHHHHHCCEEEEECCCCCCCCHHHHCCHHHCCC
>Mature Secondary Structure 
GTASNLLFQSSDWNFETLAHTYDAIEEIALGDLGLDVYPNQLEIISSEQMLDAYSSVGM
CCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEECHHHHHHHHHHCCC
PLMYQHWSFGKRFVFEDHLYRRGRRGLAYELVINSNPCITYLMEENTMAMQALVTAHAAF
CCEEHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHH
GHNHFFKNNYLFRQWTDATAILSYMDFAKKYIAKCEERHGTPAVEAILDSAHALMEQGVF
CCCCEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
RYRRPPRLSSEKERERMRERLEYEEQTYSDLWRTLPPSGENNDPTQLEKELAERKKSLNL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
PEENLLYFLEKTSLILEPWQREILRIVRVIAQYFYPQRQTKVMNEGCATFVHYTIMNKLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
DQGKISEGAMLEILQSHTNVVFQPGFDDPRFPGINPYALGFAMMQDIERICVAPTAEDRD
HCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
WFPDIAGTGNWRETLLDAWANHRDESFILQFLSPALIRKFRLFLLTDEADDNFCEVASIH
CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHH
NERGYEALRGALARSYDIGVNQPDIQVMDVDLLGDRHLRLQHNVKDGVLLEENSRDSTLR
HHCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEECCCCCCEEEECCCCHHHHH
HVRHLWGYEVSLAGVDAETGETLYECSTEELSD
HHHHHHCCEEEEECCCCCCCCHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]