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The map label for this gene is rarA [H]

Identifier: 150396236

GI number: 150396236

Start: 1086000

End: 1087310

Strand: Direct

Name: rarA [H]

Synonym: Smed_1015

Alternate gene names: 150396236

Gene position: 1086000-1087310 (Clockwise)

Preceding gene: 150396235

Following gene: 150396237

Centisome position: 28.72

GC content: 61.48

Gene sequence:

>1311_bases
ATGAGCGACCTCTTCGCCCCCCATGAACCTCCTGAGATGGCCTCGGCAAGGCCACTTGCGGACCGGCTGCGGCCGCGTAC
GCTGGGAGAGGTGACCGGCCAGGAACATCTGACCGGCGCTGACGGTGGACTCACCCGGATGATTGCCTCCGGATCGCTTG
GCTCAATGATCTTCTGGGGACCGCCCGGAACAGGAAAGACGACCGTTGCCCGTCTGCTTTCAGGCGAAGCCGGCCTTGCC
TTCGAGCAGATATCGGCGATCTTCTCCGGCGTGGCGGATTTGAAGAAAGTGTTCGAATCGGCGCGCGCGCGGCGGATGTC
GGGGCGCCAGACGCTGCTGTTCGTCGATGAGATCCATCGGTTCAATCGAGCGCAGCAGGACAGCTTCCTTCCGGTCATCG
AGGACGGCACCGTGATTCTGGTCGGCGCCACGACCGAGAACCCGTCCTTTGAGCTTAACGCCGCGCTTCTGTCGCGCGCG
CGCGTTTTGACGTTCAAACCGCACGATGAGTCTAGCCTTGAGGAACTCCTGAAACGAGCGGAGGCGGCCGAGGGAAAATC
GCTCCCGCTCGACGGCGACGCGCGGGCGAGCCTGATCCGCATGGCGGACGGGGATGGCCGTGCCATACTGACACTCGCCG
AAGAGGTGTGGCGGGCAGCGCGCCCGGATGAGCTATTCGATGTCGCGGCGCTTCAGGAGATCGTTCAGCGCCGCGCACCG
GTTTACGACAAAGGTCAGGACGGTCACTACAATCTGATCTCGGCGCTCCATAAATCCGTTCGAGGGTCCGACCCCGATGC
GGCACTCTACTATCTATGCCGCATGTTCGATGCCGGTGAGGATCCGCTTTATATCGGCAGACGCTTGGTGCGGATGGCGG
TCGAGGATATAGGGCTTGGCGATCCACAGGCACTGGTGATCTGCAACGCAGCCAAGGATGCATATGATTATCTGGGCTCT
CCGGAAGGAGAACTGGCTCTCGCCCAGGCCTGCGTCTATCTCGCGACGGCGCCCAAGTCCAACGCGGTTTATACCGCCTA
CAAGGCGGCGATGCGCGCCGCCAGGGAAAACGGCTCTCTTCTGCCCCCGAAGCACATCCTCAATGCACCGACGAAGCTTA
TGAAAGGGGAAGGCTACGGCGACGGGTATCGCTACGATCACGACGAGCCCGATGCTTTCTCGGGGCAGGACTATTTCCCT
GAGAAGATGGGCAGAAAGACCTTTTACGATCCTCCGGAGCGCGGCTTCGAGCGCGAAATCCGAAAGCGGTTGGAATGGTG
GAACAAGCTTCGGCGTGACCGCAATCCATGA

Upstream 100 bases:

>100_bases
TCGAGAGTTCGAAGACACTGGAAAGCGTCGTCGCCGAGGATGCTTCCTTCTGGCGTGTCGAGATCGAACGCAACGGCCAG
ATCATCCGTCAGTTCTTCCG

Downstream 100 bases:

>100_bases
GCATCAGTTCTCCCTTTTCCGCAAAGCTGCCTTGCCACGCAGCGCCTTGCTGGCCCCGCCGGCCTGTGGCATAGGTGTAG
CACATCGCAGACGGCTGCAC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSDLFAPHEPPEMASARPLADRLRPRTLGEVTGQEHLTGADGGLTRMIASGSLGSMIFWGPPGTGKTTVARLLSGEAGLA
FEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVIEDGTVILVGATTENPSFELNAALLSRA
RVLTFKPHDESSLEELLKRAEAAEGKSLPLDGDARASLIRMADGDGRAILTLAEEVWRAARPDELFDVAALQEIVQRRAP
VYDKGQDGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLGDPQALVICNAAKDAYDYLGS
PEGELALAQACVYLATAPKSNAVYTAYKAAMRAARENGSLLPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFP
EKMGRKTFYDPPERGFEREIRKRLEWWNKLRRDRNP

Sequences:

>Translated_436_residues
MSDLFAPHEPPEMASARPLADRLRPRTLGEVTGQEHLTGADGGLTRMIASGSLGSMIFWGPPGTGKTTVARLLSGEAGLA
FEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVIEDGTVILVGATTENPSFELNAALLSRA
RVLTFKPHDESSLEELLKRAEAAEGKSLPLDGDARASLIRMADGDGRAILTLAEEVWRAARPDELFDVAALQEIVQRRAP
VYDKGQDGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLGDPQALVICNAAKDAYDYLGS
PEGELALAQACVYLATAPKSNAVYTAYKAAMRAARENGSLLPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFP
EKMGRKTFYDPPERGFEREIRKRLEWWNKLRRDRNP
>Mature_435_residues
SDLFAPHEPPEMASARPLADRLRPRTLGEVTGQEHLTGADGGLTRMIASGSLGSMIFWGPPGTGKTTVARLLSGEAGLAF
EQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVIEDGTVILVGATTENPSFELNAALLSRAR
VLTFKPHDESSLEELLKRAEAAEGKSLPLDGDARASLIRMADGDGRAILTLAEEVWRAARPDELFDVAALQEIVQRRAPV
YDKGQDGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLGDPQALVICNAAKDAYDYLGSP
EGELALAQACVYLATAPKSNAVYTAYKAAMRAARENGSLLPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFPE
KMGRKTFYDPPERGFEREIRKRLEWWNKLRRDRNP

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=444, Percent_Identity=40.5405405405405, Blast_Score=306, Evalue=3e-83,
Organism=Homo sapiens, GI18426904, Length=444, Percent_Identity=36.7117117117117, Blast_Score=253, Evalue=3e-67,
Organism=Escherichia coli, GI1787119, Length=420, Percent_Identity=48.5714285714286, Blast_Score=386, Evalue=1e-108,
Organism=Saccharomyces cerevisiae, GI6324111, Length=429, Percent_Identity=40.3263403263403, Blast_Score=305, Evalue=1e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=206, Percent_Identity=28.6407766990291, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48132; Mature: 48001

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFAPHEPPEMASARPLADRLRPRTLGEVTGQEHLTGADGGLTRMIASGSLGSMIFWG
CCCCCCCCCCHHHCCCCCHHHHCCCHHHHHCCCCHHCCCCCCCHHHHHHCCCCCCEEEEC
PPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHR
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
FNRAQQDSFLPVIEDGTVILVGATTENPSFELNAALLSRARVLTFKPHDESSLEELLKRA
HHHHCCCCCCEEEECCCEEEEEECCCCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHHHH
EAAEGKSLPLDGDARASLIRMADGDGRAILTLAEEVWRAARPDELFDVAALQEIVQRRAP
HHCCCCCCCCCCCCHHHEEEEECCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
VYDKGQDGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLG
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPQALVICNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAYKAAMRAARENGSL
CCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
LPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFPEKMGRKTFYDPPERGFEREI
CCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHH
RKRLEWWNKLRRDRNP
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDLFAPHEPPEMASARPLADRLRPRTLGEVTGQEHLTGADGGLTRMIASGSLGSMIFWG
CCCCCCCCCHHHCCCCCHHHHCCCHHHHHCCCCHHCCCCCCCHHHHHHCCCCCCEEEEC
PPGTGKTTVARLLSGEAGLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHR
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHH
FNRAQQDSFLPVIEDGTVILVGATTENPSFELNAALLSRARVLTFKPHDESSLEELLKRA
HHHHCCCCCCEEEECCCEEEEEECCCCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHHHH
EAAEGKSLPLDGDARASLIRMADGDGRAILTLAEEVWRAARPDELFDVAALQEIVQRRAP
HHCCCCCCCCCCCCHHHEEEEECCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
VYDKGQDGHYNLISALHKSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLG
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
DPQALVICNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYTAYKAAMRAARENGSL
CCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
LPPKHILNAPTKLMKGEGYGDGYRYDHDEPDAFSGQDYFPEKMGRKTFYDPPERGFEREI
CCHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHH
RKRLEWWNKLRRDRNP
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]