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The map label for this gene is ylbK [H]

Identifier: 150395643

GI number: 150395643

Start: 450625

End: 451509

Strand: Direct

Name: ylbK [H]

Synonym: Smed_0418

Alternate gene names: 150395643

Gene position: 450625-451509 (Clockwise)

Preceding gene: 150395642

Following gene: 150395646

Centisome position: 11.92

GC content: 62.94

Gene sequence:

>885_bases
ATGGACCAGAAGCTATCCACGACTCGCAAGGTTGCGGCGAACAAGGGGGAGCCGACCATCGCGCTTGCGCTGGGAGGCGG
CGGTGCCCGTGGGCTTGCCCATATTCACGTCATCGACGCGCTTGACGAGATGGGCCTTCGGCCGGCGGTGGTCGCCGGTT
CGTCGATCGGCGCGCTCATGGGAGCCGGCGTGGCGGCCGGCATGAGCGGGAAGGAAATTCGCGAGCATGTGCTTTCGACC
GTCGGTCGCCGCGGGGAGGTGCTCAACCGGCTGTGGCGATTAAGGCCGGCAAGTCTTGCTGAAGCCATGGCGAGCGGCTT
CCGCTTCGGCCAGTTCAACATAGAGCGCGTGCTGAAGGCCTTTCTGCCTGACGCAGTGCCCGTCCGCTTCTCCGATCTGG
CCCTCCCCTTGAAAATCATCGTCACGGACTATTACGGGCAGACGGAAAGCGTCTGCGAGAGCGGCGATCTTTACAAGGCG
CTTGCCGCCTCCTGCGCCCTACCTGCGGTTTTCATGCCGGTGAAGATCGATGGCCGCGTGATGATCGACGGCGGGATCTA
CAATCCAATTCCCTTCGATCACTTGCGGGGACTGGCCGACATCGTCATCGCCGTCGATGTCGTCGGCGGGCCCGATGGGG
ATGGCGAGACGATCCCCAGCCGCATCGACAGCCTGTTCGGCGCGACCCAGTTGATGATGCAGTCGATCATCACCATGAAG
ATGCAGGCCGGCGCTCCGGACATTCTCCTCAGGCCCGATGTGGGGCGGTTCCGCGTGCTCGATTTCCTGCGGGCGCAGGA
GTTGCTTACCGCCACCAGCCGTACCAAGGATGAAACGAAGCGCGCGTTGGCAGAACGCATAGAACAGTGGAAGAAGGGAA
TGTAG

Upstream 100 bases:

>100_bases
GCGGCGCCTGAGATCGGCGCAAAGTCCGCCGGAGCTGCTCAGATTCCGCGTGATCTCGGCCTGCCTATTGTGCAGGATGG
CCGGTGACGGAGGGATGCTG

Downstream 100 bases:

>100_bases
ACAGACGATGAGCCCTATGGGGCGCCCGCACCAGTAATCAGGGGGAGGCGCTTGCGACGGCCAGGCCAATCGTAGCAGGC
TCATTCATGGACCGCCGAAG

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDQKLSTTRKVAANKGEPTIALALGGGGARGLAHIHVIDALDEMGLRPAVVAGSSIGALMGAGVAAGMSGKEIREHVLST
VGRRGEVLNRLWRLRPASLAEAMASGFRFGQFNIERVLKAFLPDAVPVRFSDLALPLKIIVTDYYGQTESVCESGDLYKA
LAASCALPAVFMPVKIDGRVMIDGGIYNPIPFDHLRGLADIVIAVDVVGGPDGDGETIPSRIDSLFGATQLMMQSIITMK
MQAGAPDILLRPDVGRFRVLDFLRAQELLTATSRTKDETKRALAERIEQWKKGM

Sequences:

>Translated_294_residues
MDQKLSTTRKVAANKGEPTIALALGGGGARGLAHIHVIDALDEMGLRPAVVAGSSIGALMGAGVAAGMSGKEIREHVLST
VGRRGEVLNRLWRLRPASLAEAMASGFRFGQFNIERVLKAFLPDAVPVRFSDLALPLKIIVTDYYGQTESVCESGDLYKA
LAASCALPAVFMPVKIDGRVMIDGGIYNPIPFDHLRGLADIVIAVDVVGGPDGDGETIPSRIDSLFGATQLMMQSIITMK
MQAGAPDILLRPDVGRFRVLDFLRAQELLTATSRTKDETKRALAERIEQWKKGM
>Mature_294_residues
MDQKLSTTRKVAANKGEPTIALALGGGGARGLAHIHVIDALDEMGLRPAVVAGSSIGALMGAGVAAGMSGKEIREHVLST
VGRRGEVLNRLWRLRPASLAEAMASGFRFGQFNIERVLKAFLPDAVPVRFSDLALPLKIIVTDYYGQTESVCESGDLYKA
LAASCALPAVFMPVKIDGRVMIDGGIYNPIPFDHLRGLADIVIAVDVVGGPDGDGETIPSRIDSLFGATQLMMQSIITMK
MQAGAPDILLRPDVGRFRVLDFLRAQELLTATSRTKDETKRALAERIEQWKKGM

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=194, Percent_Identity=34.020618556701, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI260656041, Length=194, Percent_Identity=34.020618556701, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI116256487, Length=194, Percent_Identity=34.020618556701, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI260656043, Length=194, Percent_Identity=34.020618556701, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI260656037, Length=194, Percent_Identity=34.020618556701, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI148727335, Length=198, Percent_Identity=31.8181818181818, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI148727290, Length=198, Percent_Identity=31.8181818181818, Blast_Score=72, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6323581, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281376913, Length=202, Percent_Identity=32.1782178217822, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28571388, Length=202, Percent_Identity=31.6831683168317, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 31540; Mature: 31540

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQKLSTTRKVAANKGEPTIALALGGGGARGLAHIHVIDALDEMGLRPAVVAGSSIGALM
CCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHH
GAGVAAGMSGKEIREHVLSTVGRRGEVLNRLWRLRPASLAEAMASGFRFGQFNIERVLKA
HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHH
FLPDAVPVRFSDLALPLKIIVTDYYGQTESVCESGDLYKALAASCALPAVFMPVKIDGRV
HCCCCCCCCHHHHCCCEEEEEECCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEEECCEE
MIDGGIYNPIPFDHLRGLADIVIAVDVVGGPDGDGETIPSRIDSLFGATQLMMQSIITMK
EECCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MQAGAPDILLRPDVGRFRVLDFLRAQELLTATSRTKDETKRALAERIEQWKKGM
HCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDQKLSTTRKVAANKGEPTIALALGGGGARGLAHIHVIDALDEMGLRPAVVAGSSIGALM
CCCCHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHH
GAGVAAGMSGKEIREHVLSTVGRRGEVLNRLWRLRPASLAEAMASGFRFGQFNIERVLKA
HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHH
FLPDAVPVRFSDLALPLKIIVTDYYGQTESVCESGDLYKALAASCALPAVFMPVKIDGRV
HCCCCCCCCHHHHCCCEEEEEECCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEEECCEE
MIDGGIYNPIPFDHLRGLADIVIAVDVVGGPDGDGETIPSRIDSLFGATQLMMQSIITMK
EECCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MQAGAPDILLRPDVGRFRVLDFLRAQELLTATSRTKDETKRALAERIEQWKKGM
HCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]