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The map label for this gene is yoaB [C]

Identifier: 150395560

GI number: 150395560

Start: 364338

End: 364682

Strand: Direct

Name: yoaB [C]

Synonym: Smed_0334

Alternate gene names: 150395560

Gene position: 364338-364682 (Clockwise)

Preceding gene: 150395559

Following gene: 150395561

Centisome position: 9.63

GC content: 62.32

Gene sequence:

>345_bases
ATGGAAATTAAGCGTTTCGAAAGCGGCTCGCGGATGAGCCAGGCCGTGGTCTACAACAACACCGTCTATCTCGCCGGCCA
GGTCGGCAATGCCGGTGACGATGTCGTCACCCAGACGAAGCAGGCGCTGGCGGAGGTGGATCGTCTGCTTGCGCTCGCAG
GAACGGACAAGACGCGCATTCTCTCCACGACCGTCTGGCTCGCGGACATGGCGGACTTTGCCAAGATGAACTCGGTCTGG
GACGCCTGGGTGCCTCAGGGCAATGCGCCGGCCCGCGCGACCGGCGAAGCGAAACTGGCGACCCCGGAATATCTCGTCGA
AGTGATCGTGACGGCAGCTCTCTAA

Upstream 100 bases:

>100_bases
CAAGGCCCGTCTGGCGCGGAAGAACGCCGCCTGATCGGAAAGATACAGGTCACTTCAATGCCGGCAAACTCTTGTTCGGC
TCAATACCAGGATGAGGATT

Downstream 100 bases:

>100_bases
ATCGGTTCACGCGAGCAGATATGCGCTCCATCTTCTCCGCCGTCGGCCCCTGGCCGGCGGCGTTTTGCTGCCGGCCGTAC
ACGCTTGCGGCGAAAGGAAC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MEIKRFESGSRMSQAVVYNNTVYLAGQVGNAGDDVVTQTKQALAEVDRLLALAGTDKTRILSTTVWLADMADFAKMNSVW
DAWVPQGNAPARATGEAKLATPEYLVEVIVTAAL

Sequences:

>Translated_114_residues
MEIKRFESGSRMSQAVVYNNTVYLAGQVGNAGDDVVTQTKQALAEVDRLLALAGTDKTRILSTTVWLADMADFAKMNSVW
DAWVPQGNAPARATGEAKLATPEYLVEVIVTAAL
>Mature_114_residues
MEIKRFESGSRMSQAVVYNNTVYLAGQVGNAGDDVVTQTKQALAEVDRLLALAGTDKTRILSTTVWLADMADFAKMNSVW
DAWVPQGNAPARATGEAKLATPEYLVEVIVTAAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=114, Percent_Identity=43.859649122807, Blast_Score=101, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12275; Mature: 12275

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKRFESGSRMSQAVVYNNTVYLAGQVGNAGDDVVTQTKQALAEVDRLLALAGTDKTRI
CCCCCCCCCCCHHEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
LSTTVWLADMADFAKMNSVWDAWVPQGNAPARATGEAKLATPEYLVEVIVTAAL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MEIKRFESGSRMSQAVVYNNTVYLAGQVGNAGDDVVTQTKQALAEVDRLLALAGTDKTRI
CCCCCCCCCCCHHEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH
LSTTVWLADMADFAKMNSVWDAWVPQGNAPARATGEAKLATPEYLVEVIVTAAL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA