| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is cpnA [H]
Identifier: 150395547
GI number: 150395547
Start: 349836
End: 350603
Strand: Direct
Name: cpnA [H]
Synonym: Smed_0321
Alternate gene names: 150395547
Gene position: 349836-350603 (Clockwise)
Preceding gene: 150395545
Following gene: 150395548
Centisome position: 9.25
GC content: 63.54
Gene sequence:
>768_bases TTGGCTGGTCGACTGCACGGAAAAATCGCGCTCATCAGCGGCGGAGCAGGCGGATGTGGTCTCGCCGCTGCCGAGCTTTT CGCTCGAGAGGGCGCAGCGGTCGGGATCGTCGATCTGCCGCACAGTCAAGGCGAAGCCGTTGCCTCCCGCCTGCGCGGCG AGGGGTTCAAGGCGGTGTTCGCCGCGGCCGATGTGTCGAACGAAGTTCAGGTGGAGCAGGCGGTGAAGGCGGTATCCGGC GACCTCGGGCCGGTGACCGTCCTGTTCAATCACGCCGGCACTATCGTCATCCGGCCGTTTCTTGAGACCACGGTCGAGGA ATGGGACCGGTTGATGGCCATCAATGTGCGCAGCATGTTCCTCATGACCCGCGCCGTCCTGCCGCAGATGATCGACGCCG GAGGTGGATCGATCGTGTGCACCTCATCCATCTCCGCGGTTGCCGCAACTCCCATGGAGGTCCTTTACAACACGACCAAG GGGGCATGCCACATGTTCGCGCGCTCCGTCGCCGTGGAGTTCAGGGACCGGAACATCCGGTGCAATGCGGTTTGCCCCGG CTTTATCCAGACGGCGCATGGGCAGAGGGAAGTCGACGAGCTGACCCGATACGGGGTCGATGTTTCCGACGCGGCGATCG CGGCCCAGCAGGGAAGAATGTGCCGCCCGGACGAGGTCGCCAAGGCCGCCCTTTATCTTGCGAGCGACGATGCTAGCTTC GTCAGCGGCGCCCATCTGTTCGTCGACAATTGTTTTACAGCGGTGTGA
Upstream 100 bases:
>100_bases CATCATAGCTGCCCGCCGTCAGGTACCGGACATCGAGAGGCCAGAAGAGCCGTCGTCCAAAGCCGTCGAGCGGCAGCACT TACGACAGCTGGAGGAGCAA
Downstream 100 bases:
>100_bases GGGGGAGAAAATGGCTTTCGAGAAAGGTGGAGTCTGGCGGAACTGGGTGGGCAATCAGTACTGCGTGTCGCAGTACAAGG CGGCGCCGGAAACCGAGGCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 254
Protein sequence:
>255_residues MAGRLHGKIALISGGAGGCGLAAAELFAREGAAVGIVDLPHSQGEAVASRLRGEGFKAVFAAADVSNEVQVEQAVKAVSG DLGPVTVLFNHAGTIVIRPFLETTVEEWDRLMAINVRSMFLMTRAVLPQMIDAGGGSIVCTSSISAVAATPMEVLYNTTK GACHMFARSVAVEFRDRNIRCNAVCPGFIQTAHGQREVDELTRYGVDVSDAAIAAQQGRMCRPDEVAKAALYLASDDASF VSGAHLFVDNCFTAV
Sequences:
>Translated_255_residues MAGRLHGKIALISGGAGGCGLAAAELFAREGAAVGIVDLPHSQGEAVASRLRGEGFKAVFAAADVSNEVQVEQAVKAVSG DLGPVTVLFNHAGTIVIRPFLETTVEEWDRLMAINVRSMFLMTRAVLPQMIDAGGGSIVCTSSISAVAATPMEVLYNTTK GACHMFARSVAVEFRDRNIRCNAVCPGFIQTAHGQREVDELTRYGVDVSDAAIAAQQGRMCRPDEVAKAALYLASDDASF VSGAHLFVDNCFTAV >Mature_254_residues AGRLHGKIALISGGAGGCGLAAAELFAREGAAVGIVDLPHSQGEAVASRLRGEGFKAVFAAADVSNEVQVEQAVKAVSGD LGPVTVLFNHAGTIVIRPFLETTVEEWDRLMAINVRSMFLMTRAVLPQMIDAGGGSIVCTSSISAVAATPMEVLYNTTKG ACHMFARSVAVEFRDRNIRCNAVCPGFIQTAHGQREVDELTRYGVDVSDAAIAAQQGRMCRPDEVAKAALYLASDDASFV SGAHLFVDNCFTAV
Specific function: Reduces cyclopentanol to cyclopentanone. The enzyme also shows considerable activity toward cyclohexanol [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=33.7349397590361, Blast_Score=121, Evalue=7e-28, Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=29.6442687747036, Blast_Score=114, Evalue=6e-26, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=26.8774703557312, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI15277342, Length=262, Percent_Identity=28.2442748091603, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=28.1746031746032, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=33.1658291457286, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=31.8681318681319, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI210032110, Length=213, Percent_Identity=27.2300469483568, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI7705925, Length=251, Percent_Identity=28.2868525896414, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=27.6859504132231, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=25.296442687747, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4504505, Length=192, Percent_Identity=30.7291666666667, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=28.4552845528455, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI310128830, Length=197, Percent_Identity=31.4720812182741, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI310115468, Length=197, Percent_Identity=31.4720812182741, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=30.5263157894737, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI83715985, Length=169, Percent_Identity=35.5029585798817, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI31542939, Length=247, Percent_Identity=26.3157894736842, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI59889578, Length=224, Percent_Identity=29.4642857142857, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI142976729, Length=188, Percent_Identity=26.5957446808511, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI40807363, Length=189, Percent_Identity=30.6878306878307, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI302344755, Length=104, Percent_Identity=38.4615384615385, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=24.4, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=24.4791666666667, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI302344752, Length=154, Percent_Identity=35.0649350649351, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI20149619, Length=238, Percent_Identity=28.1512605042017, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI31543615, Length=137, Percent_Identity=29.1970802919708, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=33.7254901960784, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=31.5789473684211, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=34.4, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1787335, Length=247, Percent_Identity=29.5546558704453, Blast_Score=108, Evalue=2e-25, Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=34.3873517786561, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=27.4900398406374, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=29.3172690763052, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=24.7967479674797, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=26.6666666666667, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=26.8774703557312, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI2367365, Length=255, Percent_Identity=30.1960784313725, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787820, Length=228, Percent_Identity=22.3684210526316, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=30.7392996108949, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=33.739837398374, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=30.6451612903226, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=32.156862745098, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=32.1285140562249, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=27.7551020408163, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=27.3076923076923, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=27.0992366412214, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=28.030303030303, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=26.5682656826568, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=26.3358778625954, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=27.037037037037, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=26.4150943396226, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17562904, Length=249, Percent_Identity=28.9156626506024, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17567345, Length=190, Percent_Identity=28.4210526315789, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=28.030303030303, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538182, Length=197, Percent_Identity=30.9644670050761, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=26.615969581749, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568967, Length=263, Percent_Identity=26.615969581749, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=24.7368421052632, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17562990, Length=269, Percent_Identity=24.907063197026, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=26.1780104712042, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=28.1124497991968, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17564282, Length=233, Percent_Identity=27.0386266094421, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=24.8677248677249, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17538486, Length=196, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=24.4360902255639, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17563726, Length=248, Percent_Identity=26.6129032258064, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=25.2873563218391, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=25.6, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI21357041, Length=243, Percent_Identity=32.9218106995885, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI28571526, Length=244, Percent_Identity=33.6065573770492, Blast_Score=114, Evalue=6e-26, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=31.4516129032258, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=29.7959183673469, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=28.740157480315, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI24644337, Length=244, Percent_Identity=35.2459016393443, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=30.1204819277108, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=25.6916996047431, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=30.5699481865285, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24649181, Length=205, Percent_Identity=26.8292682926829, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24640492, Length=191, Percent_Identity=28.2722513089005, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI21358495, Length=233, Percent_Identity=27.0386266094421, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17737361, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281364892, Length=191, Percent_Identity=29.3193717277487, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=28.0701754385965, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24581726, Length=189, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21356301, Length=235, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24584744, Length=191, Percent_Identity=28.2722513089005, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI28574402, Length=191, Percent_Identity=28.2722513089005, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI21357673, Length=258, Percent_Identity=27.5193798449612, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI221331218, Length=192, Percent_Identity=29.6875, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24665243, Length=189, Percent_Identity=31.7460317460317, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI221510726, Length=220, Percent_Identity=30, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221331216, Length=193, Percent_Identity=29.5336787564767, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.163 [H]
Molecular weight: Translated: 26791; Mature: 26660
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRLHGKIALISGGAGGCGLAAAELFAREGAAVGIVDLPHSQGEAVASRLRGEGFKAVF CCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEE AAADVSNEVQVEQAVKAVSGDLGPVTVLFNHAGTIVIRPFLETTVEEWDRLMAINVRSMF EECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHH LMTRAVLPQMIDAGGGSIVCTSSISAVAATPMEVLYNTTKGACHMFARSVAVEFRDRNIR HHHHHHHHHHHHCCCCCEEEECCCHHHHHCHHHHHHCCCHHHHHHHHHHHHHEECCCCEE CNAVCPGFIQTAHGQREVDELTRYGVDVSDAAIAAQQGRMCRPDEVAKAALYLASDDASF EEEECCHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHEEEEECCCCCH VSGAHLFVDNCFTAV HCCHHHHHHHHHHCC >Mature Secondary Structure AGRLHGKIALISGGAGGCGLAAAELFAREGAAVGIVDLPHSQGEAVASRLRGEGFKAVF CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCEEEE AAADVSNEVQVEQAVKAVSGDLGPVTVLFNHAGTIVIRPFLETTVEEWDRLMAINVRSMF EECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHH LMTRAVLPQMIDAGGGSIVCTSSISAVAATPMEVLYNTTKGACHMFARSVAVEFRDRNIR HHHHHHHHHHHHCCCCCEEEECCCHHHHHCHHHHHHCCCHHHHHHHHHHHHHEECCCCEE CNAVCPGFIQTAHGQREVDELTRYGVDVSDAAIAAQQGRMCRPDEVAKAALYLASDDASF EEEECCHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHEEEEECCCCCH VSGAHLFVDNCFTAV HCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12406764 [H]