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The map label for this gene is betI [H]

Identifier: 150395404

GI number: 150395404

Start: 194951

End: 195577

Strand: Direct

Name: betI [H]

Synonym: Smed_0177

Alternate gene names: 150395404

Gene position: 194951-195577 (Clockwise)

Preceding gene: 150395395

Following gene: 150395405

Centisome position: 5.15

GC content: 61.88

Gene sequence:

>627_bases
GTGAACCGCCGCAGCTTCTACCGTGCCCCGGAGGGCGAGCGGCGTCACGAATTGATCGAGGCGACGCTGGATTGTATTTC
GGAATTCGGTCTCAAGGGCGCGACCGTCCGCCAGATCGCCCTTCGCGCGGGCGTCACCGCTGGGCTCGTCCGCCACTATT
TCGTATCCAAAGACCAGATGGTCGCGGAGGCTTACCGCGCCGTCATCGCCTCTCTCACGGAGAAGGCGGCGAATGTCGAG
GGTGATCCGGCGACGCGTCTCAGGGACTTCATAGCGATCAACCTGACCGAGCCGGTCGCTGACAGCCGCAGCATTTCTCT
CTGGGCCGCCTTCATCAGTCAGGTGAGGGTCGATCCGGTGCTTGCGGAAATCCATCGCGACGGCTATCTCGCCTTCCGCA
ATGTTTTGCAGGCGCTGCTTGCCGATTTCCTTGCGGCCAATGGCCGGCCTGCAGGCCCCGAGGAGTGCCGCCGCTACGCG
ATCGCGATCAACGGCCTCGTTGACGGACTTTGGGTGGAAGGCTGTCTGGCCGGCGATCTTTTTCGCGAGGGCGAGCTGGT
CAGCATCGCCATGGCGTCGGTTGAAGCCCTGCTCGGTCTTCCCATCAAAAAAACAGAAAACAAATAA

Upstream 100 bases:

>100_bases
TTAACCTTCTCAACGAACGGTCACCCCGGAGCAGCGACATGAGCCCAACCGTTTCGCAGGCAATCACCATCTGGCTGAAC
GCCAATGTTCGGAGCATGCG

Downstream 100 bases:

>100_bases
GGGAGCTACTTTTTGCGCTACGCGTCGATCACATCCCGCCTCGCCGACCTCGGTTCCGGAAAATGGACGCTGCATGTTCG
CGCGCGTCAGCTGAAGGCGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNRRSFYRAPEGERRHELIEATLDCISEFGLKGATVRQIALRAGVTAGLVRHYFVSKDQMVAEAYRAVIASLTEKAANVE
GDPATRLRDFIAINLTEPVADSRSISLWAAFISQVRVDPVLAEIHRDGYLAFRNVLQALLADFLAANGRPAGPEECRRYA
IAINGLVDGLWVEGCLAGDLFREGELVSIAMASVEALLGLPIKKTENK

Sequences:

>Translated_208_residues
MNRRSFYRAPEGERRHELIEATLDCISEFGLKGATVRQIALRAGVTAGLVRHYFVSKDQMVAEAYRAVIASLTEKAANVE
GDPATRLRDFIAINLTEPVADSRSISLWAAFISQVRVDPVLAEIHRDGYLAFRNVLQALLADFLAANGRPAGPEECRRYA
IAINGLVDGLWVEGCLAGDLFREGELVSIAMASVEALLGLPIKKTENK
>Mature_208_residues
MNRRSFYRAPEGERRHELIEATLDCISEFGLKGATVRQIALRAGVTAGLVRHYFVSKDQMVAEAYRAVIASLTEKAANVE
GDPATRLRDFIAINLTEPVADSRSISLWAAFISQVRVDPVLAEIHRDGYLAFRNVLQALLADFLAANGRPAGPEECRRYA
IAINGLVDGLWVEGCLAGDLFREGELVSIAMASVEALLGLPIKKTENK

Specific function: Repressor involved in choline regulation of the bet genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786505, Length=170, Percent_Identity=30.5882352941176, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR017757
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22798; Mature: 22798

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRSFYRAPEGERRHELIEATLDCISEFGLKGATVRQIALRAGVTAGLVRHYFVSKDQM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHH
VAEAYRAVIASLTEKAANVEGDPATRLRDFIAINLTEPVADSRSISLWAAFISQVRVDPV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHH
LAEIHRDGYLAFRNVLQALLADFLAANGRPAGPEECRRYAIAINGLVDGLWVEGCLAGDL
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FREGELVSIAMASVEALLGLPIKKTENK
HCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNRRSFYRAPEGERRHELIEATLDCISEFGLKGATVRQIALRAGVTAGLVRHYFVSKDQM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHH
VAEAYRAVIASLTEKAANVEGDPATRLRDFIAINLTEPVADSRSISLWAAFISQVRVDPV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHH
LAEIHRDGYLAFRNVLQALLADFLAANGRPAGPEECRRYAIAINGLVDGLWVEGCLAGDL
HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FREGELVSIAMASVEALLGLPIKKTENK
HCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA