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The map label for this gene is agmR [H]

Identifier: 150395391

GI number: 150395391

Start: 179573

End: 180220

Strand: Direct

Name: agmR [H]

Synonym: Smed_0164

Alternate gene names: 150395391

Gene position: 179573-180220 (Clockwise)

Preceding gene: 150395390

Following gene: 150395393

Centisome position: 4.75

GC content: 62.19

Gene sequence:

>648_bases
ATGCCGGAACTGACGATCATCATCGCTGACGACCATCCACTCTTCCGCGGCGCAATGCGCCAGGCGCTCAGCAGCTTGTC
GGGCGCCCCGGCGATCGTCGAGGCCGGAGATTTCGCAGCTGCGCGCAAGTCCGCTGCAGAGAATCCGGAAGCCGACCTGA
TGTTGCTCGATCTGACCATGCCGGGCGTCAGTGGACTTTCGGGATTGATCGCGCTTCGCGCCGAGTTTCCAAGCTTGCCC
GTGATGATCGTCTCTGCTCATGACGATCCGGCGACCATTCATCGTGCTCTCGACCTGGGCGCGGCCGGGTTCCTGTCCAA
ATCTGCCGGTATCGAGGAAATCCGCGACGGTATCGCAAAGGTGATGGCGGGCGAGGTGTTCGTGCCGGCCGGTTACGACC
GGAATCAGGAATACGAGCCGGAAGTTGCCGATCTGCTGCATCGGCTGCAGACGCTGACACCGCAGCAATCGCGCGTCCTT
TCGATGCTTGCCGAGGGCCTGCTCAACAAGCAGATCGCCTATGAGCTCGGCGTGTCGGAGGCGACGATCAAGGCGCATGT
CTCGGCTATCCTGCTGAAGCTCAACGTCGACAGCCGCACGCAGGCCGTCATTCAGCTATCGAAGCTCGGCAGCGTGGCTG
CGGCTTGA

Upstream 100 bases:

>100_bases
GAATTGCTGTTCAAGGAAACATGCGGCAGCAGCGCTCACATGCGTTATCATGCGCGATGCTGCAGGGTCGCAGCTGAGGC
TCTTGGGAGGGAGCGTCATC

Downstream 100 bases:

>100_bases
CCCGCCGCCAGCCGTCCGCCTCCGCCCCTCATCCGCCTGCCGCCTGACCCTTCGCCCGGTTGTCCCTTCGCCCCGCATGG
GGGAAAATGGTCGGCAGGCC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MPELTIIIADDHPLFRGAMRQALSSLSGAPAIVEAGDFAAARKSAAENPEADLMLLDLTMPGVSGLSGLIALRAEFPSLP
VMIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIRDGIAKVMAGEVFVPAGYDRNQEYEPEVADLLHRLQTLTPQQSRVL
SMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLGSVAAA

Sequences:

>Translated_215_residues
MPELTIIIADDHPLFRGAMRQALSSLSGAPAIVEAGDFAAARKSAAENPEADLMLLDLTMPGVSGLSGLIALRAEFPSLP
VMIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIRDGIAKVMAGEVFVPAGYDRNQEYEPEVADLLHRLQTLTPQQSRVL
SMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLGSVAAA
>Mature_214_residues
PELTIIIADDHPLFRGAMRQALSSLSGAPAIVEAGDFAAARKSAAENPEADLMLLDLTMPGVSGLSGLIALRAEFPSLPV
MIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIRDGIAKVMAGEVFVPAGYDRNQEYEPEVADLLHRLQTLTPQQSRVLS
MLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKLGSVAAA

Specific function: Positive activator for glycerol metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=213, Percent_Identity=38.9671361502347, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788546, Length=208, Percent_Identity=26.9230769230769, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790102, Length=200, Percent_Identity=29.5, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788222, Length=196, Percent_Identity=23.9795918367347, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1786747, Length=201, Percent_Identity=25.8706467661692, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788712, Length=197, Percent_Identity=28.4263959390863, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787473, Length=214, Percent_Identity=31.3084112149533, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1789937, Length=204, Percent_Identity=24.5098039215686, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22688; Mature: 22557

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPELTIIIADDHPLFRGAMRQALSSLSGAPAIVEAGDFAAARKSAAENPEADLMLLDLTM
CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHCCCCCCCCEEEEEECC
PGVSGLSGLIALRAEFPSLPVMIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIRDGIAK
CCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHH
VMAGEVFVPAGYDRNQEYEPEVADLLHRLQTLTPQQSRVLSMLAEGLLNKQIAYELGVSE
HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
ATIKAHVSAILLKLNVDSRTQAVIQLSKLGSVAAA
HHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PELTIIIADDHPLFRGAMRQALSSLSGAPAIVEAGDFAAARKSAAENPEADLMLLDLTM
CCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHCCCCCCCCEEEEEECC
PGVSGLSGLIALRAEFPSLPVMIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIRDGIAK
CCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHH
VMAGEVFVPAGYDRNQEYEPEVADLLHRLQTLTPQQSRVLSMLAEGLLNKQIAYELGVSE
HHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
ATIKAHVSAILLKLNVDSRTQAVIQLSKLGSVAAA
HHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]