| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is glnD [H]
Identifier: 150395259
GI number: 150395259
Start: 31282
End: 34131
Strand: Direct
Name: glnD [H]
Synonym: Smed_0031
Alternate gene names: 150395259
Gene position: 31282-34131 (Clockwise)
Preceding gene: 150395258
Following gene: 150395260
Centisome position: 0.83
GC content: 62.0
Gene sequence:
>2850_bases ATGGCCAGACACGAAACCTCCTTTCCCGAAATCCTGGATGTGGCGGCGCTTCGGGCCAGGTGCGACTTCATCGCCTCCGC TCATGCCGAACAGCGCGAACCAATGCGCCGGGCCTTGCTCGCGGCCTTCAAGGAGGCAAATATTGCGGGCCGCGCCAAGG CGCGCGAATTGCTCGCCGCTGACGGCGCAGGAATAAAATGCGCTGAGCGCATCTCGTGGCTTCAGGACCAACTCATTACG CTGTTGCACGACTTCGTGCTGAACCAGGTATTCGACGCCGCTAAAGCCCCTGAGACTTCCCGGATAGCCGTCACGGCTGT CGGCGGTTACGGGCGCGGAACGCTTGCACCCGGTTCCGACATCGACCTCCTCTTCCTCCTTCCTGCCAAGAAGGCGGTCT GGGCGGAGCCGGCGATCGAGTTCATGCTGTATATTCTCTGGGACCTTGGCTTCAAGGTCGGCCACGCGACGCGCACGATC GAGGATTGCATTCGCCTGTCGCGGGCCGACATGACCATCCGGACAGCGATCCTCGAATGCCGCTATGTCTGCGGTTCCGT CGCCCTGGCAAGCGAGCTCGAAACGCGCTTCGACCATGAGATCGTCCGCAATACCGGCCCGGAATTCATTGCCGCCAAGC TCGCCGAACGCGACGAGCGACATCGCAAGGCGGGCGACACGCGCTACCTCGTCGAACCGAACGTCAAGGAAGGCAAGGGC GGCTTGCGCGATCTGCACACGCTCTTCTGGATTTCGAAATATTTCTACCGGGTCAAGGATTCCGCCGATCTCGTCAAGCT CGGCGTGCTTTCGAGGCAGGAGTACAAGCTCTTCCAGAAGGCGGAAGATTTTCTCTGGGCGGTGCGCTGCCATATGCACT TCCTGACCGGCAAGGCTGAGGAACGCCTCTCCTTCGATATCCAGCGCGAGATAGCCGAAGCGCTCGGCTACCACGATCAC CCCGGCCTTTCGGCGGTCGAACGTTTCATGAAGCATTACTTTCTCGTGGCGAAGGATGTCGGCGACCTGACGCGCATCTT CTGCTCGGCTCTGGAAGATCAGCAGGCCAAGGACGCCCCCGGTATTTCCGGCGTGATCAGCCGCTTCCGCAATCGTGTCC GCAAAATCCCCGGCACGCTGGATTTCGTCGACGATGGAGGGCGCATCGCGCTCGCGAGCCCTGACGTTTTCAAGCGCGAC CCTGTGAACCTGCTGCGCATGTTTCACATCGCCGATATCAACGGGCTCGAATTTCACCCGGCGGCGCTGAAGCAGGTGAC GCGCTCCCTCAGCCTGATCACACCGCATTTGCGAGAGAACGAGGAAGCGAACCGGCTTTTCCTGTCTATCCTGACCTCCC GCCGCAATCCGGAACTGATCCTCCGCCGAATGAACGAGGCGGCGGTTCTTGGCCGCTTCATTCCGGAATTCGGCAAGATC GTATCGATGATGCAGTTCAATATGTATCACCACTATACCGTGGACGAACATCTTCTGCGCGCGGTCGACGTTCTCTCCCG CATAGAGCGGGGACTTGAGGAGGAGGCGCATCCCCTGACGGCGATGCTGATGCCGGCCATCGAGGATCGCGAAGCCCTTT ATGTCGCGGTGCTGCTGCACGACATCGCCAAGGGACGCCCGGAGGATCATTCGGTGGCCGGCGCAAAGGTCGCCCGCAAG CTTTGCCCGCGTTTCAGGCTTTCGCCGAAACAGACCGAGACGGTCGTCTGGCTGGTCGAGGAACATCTGACCATGTCGAT GGTCGCGCAGACCCGGGATCTCAACGATCGCAAAACCATCGTCGATTTCGCCGAGCGGGTTCAATCCCTCGAGCGGCTGA AGATGCTGCTCATCCTGACGGTCTGCGATATCCGCGCGGTCGGACCCGGCGTATGGAACGGCTGGAAGGGGCAGCTGCTG CGGACGCTCTATTACGAGACAGAGCTCCTGCTCTCCGGCGGCTTTTCGGAACTGTCGCGCAAGGAGAGGGCGAAGCATGC CGCCGACATGCTGGAGGAGGCGCTCGCCGACTGGCCCAAGGAGGAGCGGCAGACCTATGTGCGACTGCACTACCAGCCCT ACCTCCTGACCGTAGCGCTCGACGAGCAGGTACGTCATGCGGCCTTCATCCGCGAGGCGGATGCTGCGGGCAGGACGCTC GCGACCATGGTGCGCACCCATGACTTCCACGCCATAACCGAAATCACGGTGCTGTCGCCGGACCATCCGCGCCTGCTGAC CGTCATCGCCGGCGCTTGCGCTGCTGCGGGTGCCAACATCGTCGGCGCCCAGATCCACACGACTTCGGACGGCCGGGCGC TGGACACGATTCTCGTCAACCGCGAGTTCTCGGTCGCCGAGGACGAGACGCGTCGTGCGGCGAGCATCGGCAAACTGATC GAGGACGTGCTCTCCGGCCGCAAGAAACTGCCCGACGTGATCGCAAGCCGGACGCGCTCGAAGAAGCGCAGCAGGGCATT CACCGTGACGCCGGAGGTAACGATCAGCAACGCGCTGTCGAACAAGTTCACCGTCATCGAGGTCGAGGGCCTCGACCGGA CGGGTCTTCTCTCCGAAGTGACCGCGGTCCTGTCAGACCTGTCGCTCGACATTGCGTCGGCCCATATCACCACCTTCGGC GAAAAGGTGATCGATACATTCTACGTCACCGACCTGGTCGGCTCCAAGATCACCAGCGAAAACCGGCAGATGAACATCGC GGCTCGCCTCAAGGCGGTGCTGGCGGGCGAGGTGGACGAAGCCCGCGAGCGCATGCCCTCGGGGATCATCGCGCCGACGC CTGTGCCACGCGCATCCCATGGTTCCAAAGCGACAAAAGCCGAAACATGA
Upstream 100 bases:
>100_bases TTTTCCGCCCGCATCCCGGTCTATCTCTTTGGAATCGATCACGTTCATGTTTTAGGAAAACATCGTGATCTCAGTCGGAC AGGACGCCCTTCGGCACTTC
Downstream 100 bases:
>100_bases GTCTGCTCAAGAAATTCGCGACGGTCGGCGGCGCCACGCTCGGAAGCCGGCTCTTCGGCTTCATCCGGGAAACCTTCATG GCGGCCGCGCTCGGCACGGG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 949; Mature: 948
Protein sequence:
>949_residues MARHETSFPEILDVAALRARCDFIASAHAEQREPMRRALLAAFKEANIAGRAKARELLAADGAGIKCAERISWLQDQLIT LLHDFVLNQVFDAAKAPETSRIAVTAVGGYGRGTLAPGSDIDLLFLLPAKKAVWAEPAIEFMLYILWDLGFKVGHATRTI EDCIRLSRADMTIRTAILECRYVCGSVALASELETRFDHEIVRNTGPEFIAAKLAERDERHRKAGDTRYLVEPNVKEGKG GLRDLHTLFWISKYFYRVKDSADLVKLGVLSRQEYKLFQKAEDFLWAVRCHMHFLTGKAEERLSFDIQREIAEALGYHDH PGLSAVERFMKHYFLVAKDVGDLTRIFCSALEDQQAKDAPGISGVISRFRNRVRKIPGTLDFVDDGGRIALASPDVFKRD PVNLLRMFHIADINGLEFHPAALKQVTRSLSLITPHLRENEEANRLFLSILTSRRNPELILRRMNEAAVLGRFIPEFGKI VSMMQFNMYHHYTVDEHLLRAVDVLSRIERGLEEEAHPLTAMLMPAIEDREALYVAVLLHDIAKGRPEDHSVAGAKVARK LCPRFRLSPKQTETVVWLVEEHLTMSMVAQTRDLNDRKTIVDFAERVQSLERLKMLLILTVCDIRAVGPGVWNGWKGQLL RTLYYETELLLSGGFSELSRKERAKHAADMLEEALADWPKEERQTYVRLHYQPYLLTVALDEQVRHAAFIREADAAGRTL ATMVRTHDFHAITEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRRAASIGKLI EDVLSGRKKLPDVIASRTRSKKRSRAFTVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFG EKVIDTFYVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVPRASHGSKATKAET
Sequences:
>Translated_949_residues MARHETSFPEILDVAALRARCDFIASAHAEQREPMRRALLAAFKEANIAGRAKARELLAADGAGIKCAERISWLQDQLIT LLHDFVLNQVFDAAKAPETSRIAVTAVGGYGRGTLAPGSDIDLLFLLPAKKAVWAEPAIEFMLYILWDLGFKVGHATRTI EDCIRLSRADMTIRTAILECRYVCGSVALASELETRFDHEIVRNTGPEFIAAKLAERDERHRKAGDTRYLVEPNVKEGKG GLRDLHTLFWISKYFYRVKDSADLVKLGVLSRQEYKLFQKAEDFLWAVRCHMHFLTGKAEERLSFDIQREIAEALGYHDH PGLSAVERFMKHYFLVAKDVGDLTRIFCSALEDQQAKDAPGISGVISRFRNRVRKIPGTLDFVDDGGRIALASPDVFKRD PVNLLRMFHIADINGLEFHPAALKQVTRSLSLITPHLRENEEANRLFLSILTSRRNPELILRRMNEAAVLGRFIPEFGKI VSMMQFNMYHHYTVDEHLLRAVDVLSRIERGLEEEAHPLTAMLMPAIEDREALYVAVLLHDIAKGRPEDHSVAGAKVARK LCPRFRLSPKQTETVVWLVEEHLTMSMVAQTRDLNDRKTIVDFAERVQSLERLKMLLILTVCDIRAVGPGVWNGWKGQLL RTLYYETELLLSGGFSELSRKERAKHAADMLEEALADWPKEERQTYVRLHYQPYLLTVALDEQVRHAAFIREADAAGRTL ATMVRTHDFHAITEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRRAASIGKLI EDVLSGRKKLPDVIASRTRSKKRSRAFTVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFG EKVIDTFYVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVPRASHGSKATKAET >Mature_948_residues ARHETSFPEILDVAALRARCDFIASAHAEQREPMRRALLAAFKEANIAGRAKARELLAADGAGIKCAERISWLQDQLITL LHDFVLNQVFDAAKAPETSRIAVTAVGGYGRGTLAPGSDIDLLFLLPAKKAVWAEPAIEFMLYILWDLGFKVGHATRTIE DCIRLSRADMTIRTAILECRYVCGSVALASELETRFDHEIVRNTGPEFIAAKLAERDERHRKAGDTRYLVEPNVKEGKGG LRDLHTLFWISKYFYRVKDSADLVKLGVLSRQEYKLFQKAEDFLWAVRCHMHFLTGKAEERLSFDIQREIAEALGYHDHP GLSAVERFMKHYFLVAKDVGDLTRIFCSALEDQQAKDAPGISGVISRFRNRVRKIPGTLDFVDDGGRIALASPDVFKRDP VNLLRMFHIADINGLEFHPAALKQVTRSLSLITPHLRENEEANRLFLSILTSRRNPELILRRMNEAAVLGRFIPEFGKIV SMMQFNMYHHYTVDEHLLRAVDVLSRIERGLEEEAHPLTAMLMPAIEDREALYVAVLLHDIAKGRPEDHSVAGAKVARKL CPRFRLSPKQTETVVWLVEEHLTMSMVAQTRDLNDRKTIVDFAERVQSLERLKMLLILTVCDIRAVGPGVWNGWKGQLLR TLYYETELLLSGGFSELSRKERAKHAADMLEEALADWPKEERQTYVRLHYQPYLLTVALDEQVRHAAFIREADAAGRTLA TMVRTHDFHAITEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVNREFSVAEDETRRAASIGKLIE DVLSGRKKLPDVIASRTRSKKRSRAFTVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGE KVIDTFYVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVPRASHGSKATKAET
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=849, Percent_Identity=32.3910482921084, Blast_Score=390, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 106230; Mature: 106098
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARHETSFPEILDVAALRARCDFIASAHAEQREPMRRALLAAFKEANIAGRAKARELLAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC DGAGIKCAERISWLQDQLITLLHDFVLNQVFDAAKAPETSRIAVTAVGGYGRGTLAPGSD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCC IDLLFLLPAKKAVWAEPAIEFMLYILWDLGFKVGHATRTIEDCIRLSRADMTIRTAILEC CCEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHHHHCCHHHHHHHHHH RYVCGSVALASELETRFDHEIVRNTGPEFIAAKLAERDERHRKAGDTRYLVEPNVKEGKG HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC GLRDLHTLFWISKYFYRVKDSADLVKLGVLSRQEYKLFQKAEDFLWAVRCHMHFLTGKAE HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH ERLSFDIQREIAEALGYHDHPGLSAVERFMKHYFLVAKDVGDLTRIFCSALEDQQAKDAP HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GISGVISRFRNRVRKIPGTLDFVDDGGRIALASPDVFKRDPVNLLRMFHIADINGLEFHP CHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCH AALKQVTRSLSLITPHLRENEEANRLFLSILTSRRNPELILRRMNEAAVLGRFIPEFGKI HHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH VSMMQFNMYHHYTVDEHLLRAVDVLSRIERGLEEEAHPLTAMLMPAIEDREALYVAVLLH HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHH DIAKGRPEDHSVAGAKVARKLCPRFRLSPKQTETVVWLVEEHLTMSMVAQTRDLNDRKTI HHHCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHH VDFAERVQSLERLKMLLILTVCDIRAVGPGVWNGWKGQLLRTLYYETELLLSGGFSELSR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH KERAKHAADMLEEALADWPKEERQTYVRLHYQPYLLTVALDEQVRHAAFIREADAAGRTL HHHHHHHHHHHHHHHHCCCHHHCCEEEEEEECCEEEEEEEHHHHHHHHHHHHHHHCCHHH ATMVRTHDFHAITEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVN HHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEHHEEEC REFSVAEDETRRAASIGKLIEDVLSGRKKLPDVIASRTRSKKRSRAFTVTPEVTISNALS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCHHHHHHHC NKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSE CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC NRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVPRASHGSKATKAET CCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ARHETSFPEILDVAALRARCDFIASAHAEQREPMRRALLAAFKEANIAGRAKARELLAA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC DGAGIKCAERISWLQDQLITLLHDFVLNQVFDAAKAPETSRIAVTAVGGYGRGTLAPGSD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCC IDLLFLLPAKKAVWAEPAIEFMLYILWDLGFKVGHATRTIEDCIRLSRADMTIRTAILEC CCEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHHHHCCHHHHHHHHHH RYVCGSVALASELETRFDHEIVRNTGPEFIAAKLAERDERHRKAGDTRYLVEPNVKEGKG HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC GLRDLHTLFWISKYFYRVKDSADLVKLGVLSRQEYKLFQKAEDFLWAVRCHMHFLTGKAE HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH ERLSFDIQREIAEALGYHDHPGLSAVERFMKHYFLVAKDVGDLTRIFCSALEDQQAKDAP HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GISGVISRFRNRVRKIPGTLDFVDDGGRIALASPDVFKRDPVNLLRMFHIADINGLEFHP CHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCH AALKQVTRSLSLITPHLRENEEANRLFLSILTSRRNPELILRRMNEAAVLGRFIPEFGKI HHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH VSMMQFNMYHHYTVDEHLLRAVDVLSRIERGLEEEAHPLTAMLMPAIEDREALYVAVLLH HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHH DIAKGRPEDHSVAGAKVARKLCPRFRLSPKQTETVVWLVEEHLTMSMVAQTRDLNDRKTI HHHCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCHHHH VDFAERVQSLERLKMLLILTVCDIRAVGPGVWNGWKGQLLRTLYYETELLLSGGFSELSR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH KERAKHAADMLEEALADWPKEERQTYVRLHYQPYLLTVALDEQVRHAAFIREADAAGRTL HHHHHHHHHHHHHHHHCCCHHHCCEEEEEEECCEEEEEEEHHHHHHHHHHHHHHHCCHHH ATMVRTHDFHAITEITVLSPDHPRLLTVIAGACAAAGANIVGAQIHTTSDGRALDTILVN HHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEHHEEEC REFSVAEDETRRAASIGKLIEDVLSGRKKLPDVIASRTRSKKRSRAFTVTPEVTISNALS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCHHHHHHHC NKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSE CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC NRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVPRASHGSKATKAET CCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11274131; 11481430 [H]