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The map label for this gene is rpoE [C]

Identifier: 150010514

GI number: 150010514

Start: 4797650

End: 4798204

Strand: Direct

Name: rpoE [C]

Synonym: BDI_3961

Alternate gene names: 150010514

Gene position: 4797650-4798204 (Clockwise)

Preceding gene: 150010505

Following gene: 150010515

Centisome position: 99.71

GC content: 48.29

Gene sequence:

>555_bases
ATGACAGATGAAAAATCCATTTTAGAACAATTTGCCGCTGGAAATCATACCGCTTTCCGGGAATTGTTCATGCGTTACCA
TCTGAAAGTCTATTATTTCGTGCTGGGACTCGTGAAGTCCGAGAGTGATGCCGAGGACTTGACTCAAGAGATTTTCCTAA
AGCTTTGGACGCATCGGAGTCGTTTCACGGAAGTGAGGACGTTCGGTTCCTACCTCTATGTGCTGGCGAAGCATACGGCG
TTCAATTATATCGAATCCCGCCGGGTGAATCTGGAGAGCTTAGAGAGAGCTGGGGTGGAAGACGAGGAGAGAGGGGATAC
GCCTTACGAGGATTTAGTTGCCAAGGATTTACGGTTGCTAGTGGATATGATCGTGGAGACCATGCCGCCACAGCGGAAGA
TGATCTACCGGATGAGCCGCGACGAGGGTTTGTCGAACACAGAGATCGCTGAGAATCTACAACTCTCGAAAAAGACCGTG
GAAAACCACTTGAACCTAGCGCTAAAGGAATTGCGGAACGCGGTATTGACTTTCCTTCTTGTTATGATGTGTTAA

Upstream 100 bases:

>100_bases
ATTTCTTTCAATTTTGTATTTATTAACAAGAAAAGCGTTCTTACGGCCGGTTATTATTACTTTATTTGCTCCCACCGTAT
CGTGAAAGGAGTTAATCGAG

Downstream 100 bases:

>100_bases
TAGCTTGGGGGTAAAGCGGCAAAAGGAGGTCCTATAAACAAGATAAAATAGAAAAGCAGGAATGAGTCCTATAAAAAAGA
TATTAAAATACTTTTTCCAT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Factor ECF Subfamily; Sigma Factor; RNA Polymerase Sigma-W Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF-Type RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; Sigma-; Sigma-70 Region 4 Family; RNA Polymerase Sigma Factor RpoE; Sigma-70 Region 2 Subfamily; ECF-Type RNA Polymerase; RNA Polymerase ECF Sigma Factor; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTDEKSILEQFAAGNHTAFRELFMRYHLKVYYFVLGLVKSESDAEDLTQEIFLKLWTHRSRFTEVRTFGSYLYVLAKHTA
FNYIESRRVNLESLERAGVEDEERGDTPYEDLVAKDLRLLVDMIVETMPPQRKMIYRMSRDEGLSNTEIAENLQLSKKTV
ENHLNLALKELRNAVLTFLLVMMC

Sequences:

>Translated_184_residues
MTDEKSILEQFAAGNHTAFRELFMRYHLKVYYFVLGLVKSESDAEDLTQEIFLKLWTHRSRFTEVRTFGSYLYVLAKHTA
FNYIESRRVNLESLERAGVEDEERGDTPYEDLVAKDLRLLVDMIVETMPPQRKMIYRMSRDEGLSNTEIAENLQLSKKTV
ENHLNLALKELRNAVLTFLLVMMC
>Mature_183_residues
TDEKSILEQFAAGNHTAFRELFMRYHLKVYYFVLGLVKSESDAEDLTQEIFLKLWTHRSRFTEVRTFGSYLYVLAKHTAF
NYIESRRVNLESLERAGVEDEERGDTPYEDLVAKDLRLLVDMIVETMPPQRKMIYRMSRDEGLSNTEIAENLQLSKKTVE
NHLNLALKELRNAVLTFLLVMMC

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788926, Length=187, Percent_Identity=27.807486631016, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21594; Mature: 21463

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDEKSILEQFAAGNHTAFRELFMRYHLKVYYFVLGLVKSESDAEDLTQEIFLKLWTHRS
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RFTEVRTFGSYLYVLAKHTAFNYIESRRVNLESLERAGVEDEERGDTPYEDLVAKDLRLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
VDMIVETMPPQRKMIYRMSRDEGLSNTEIAENLQLSKKTVENHLNLALKELRNAVLTFLL
HHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMMC
HHHC
>Mature Secondary Structure 
TDEKSILEQFAAGNHTAFRELFMRYHLKVYYFVLGLVKSESDAEDLTQEIFLKLWTHRS
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RFTEVRTFGSYLYVLAKHTAFNYIESRRVNLESLERAGVEDEERGDTPYEDLVAKDLRLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
VDMIVETMPPQRKMIYRMSRDEGLSNTEIAENLQLSKKTVENHLNLALKELRNAVLTFLL
HHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMMC
HHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA