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The map label for this gene is araC [C]

Identifier: 150010413

GI number: 150010413

Start: 4690368

End: 4691279

Strand: Direct

Name: araC [C]

Synonym: BDI_3853

Alternate gene names: 150010413

Gene position: 4690368-4691279 (Clockwise)

Preceding gene: 150010411

Following gene: 150010420

Centisome position: 97.48

GC content: 47.48

Gene sequence:

>912_bases
ATGAGAATATGCTTTATTAACCTAATTTACATGTTGTTTTGTATGATTCAGCCCGTATTCACATTCGACAACTTGCTTCA
ACGCCTACAGCTGGGCAAGGATGCCACTCCTTTCGTCATCTGGCATGAAAAAGACTTGTTCGGTACACACGACAACCCTG
TAAAGATAGACCTTCCCTGTCTGTTTCTTTGCTTGGACGGAGAAATGCTACTGGACATCAACCTGCAACCCTACTGTTTC
AACCGTGAGCACCTGCTTTGCTTCACCACACCCTGTGCCTGCCGCATTGTAAGCCGCAGCCCCGGTTTCAGGTGTGTGGG
TCTGCTGCTTTCAAAAGCCTTTTGGCGGCAACTCGTCCATATCGAGCGGACTTTGGGGAAGATTGCCATACGCAATGCTT
TCATTGCCCTCAATGAAGACGAACACGAACGGTTGAGCCGTTTCTATGACCTGCTGTGTCTCTGCGCTGACGCTTCCGGC
TTGAAAGATTCCTCAGGAACTCTTTATCCGCTCATTTTGGGAATGTTCTGCCAAGTACGCAATGTCTGCCGACGCTTGGA
AGATACCGTCATCCCCGCATCACACAGCGAGAAGATATTTTATGACTTTCTTGATTTGTTGCACACCCATTACTGCCAAC
AGAGGCGCGTATCATTTTATGCAGATGAACTTTTACTGACCCCCCGTCACCTCACTACCGTTATCCGGCAAGTAAGCGGG
CGAAGTGCCGCACGGTGGATAGAGGAATACATCGTACTTGAAGCGCAGATCCTGCTGCGTAATTCTTCCAAAGCTATCAA
GGAGATTGCTTATGATCTGGGATTTAATGAACAGTCACTTTTTTCCAAATATTTCAGTAGGGTTTCGGGTAGTTCACCTG
AGTCATATCGCCTTTATTCCACTGCAGATTAG

Upstream 100 bases:

>100_bases
CATTGTCATACTGATTTGATTACGTTGCAAAATTACTGCGTTATTTCATGCTTGTAAATGCGTTTTTCTGCATTTGGTTT
GTATATTTGTACGATTATTA

Downstream 100 bases:

>100_bases
ACAGGGCAGTTTCAGCTAAATTCCCTGTTTTTACGAACTTATTATATAAAATCTGTTTATAGGATTTCTCATTCTATACT
TGAAATAGTGACATCGTCAA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; AraC Family Transcriptional Regulator; AraC-Type Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Phosphomethylpyrimidine Kinase; Transcription Regulator; AraC/XylS Family Transcriptional Regulator; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; Transcriptional Regulator PobR; Helix-Turn-Helix- Domain Containing Protein AraC Type; AraC-Type Transcriptional Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; AraC Family Regulatory Helix-Turn-Helix Protein; Transcriptional Regulatory Protein; AraC-Family Transcriptional Regulator

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MRICFINLIYMLFCMIQPVFTFDNLLQRLQLGKDATPFVIWHEKDLFGTHDNPVKIDLPCLFLCLDGEMLLDINLQPYCF
NREHLLCFTTPCACRIVSRSPGFRCVGLLLSKAFWRQLVHIERTLGKIAIRNAFIALNEDEHERLSRFYDLLCLCADASG
LKDSSGTLYPLILGMFCQVRNVCRRLEDTVIPASHSEKIFYDFLDLLHTHYCQQRRVSFYADELLLTPRHLTTVIRQVSG
RSAARWIEEYIVLEAQILLRNSSKAIKEIAYDLGFNEQSLFSKYFSRVSGSSPESYRLYSTAD

Sequences:

>Translated_303_residues
MRICFINLIYMLFCMIQPVFTFDNLLQRLQLGKDATPFVIWHEKDLFGTHDNPVKIDLPCLFLCLDGEMLLDINLQPYCF
NREHLLCFTTPCACRIVSRSPGFRCVGLLLSKAFWRQLVHIERTLGKIAIRNAFIALNEDEHERLSRFYDLLCLCADASG
LKDSSGTLYPLILGMFCQVRNVCRRLEDTVIPASHSEKIFYDFLDLLHTHYCQQRRVSFYADELLLTPRHLTTVIRQVSG
RSAARWIEEYIVLEAQILLRNSSKAIKEIAYDLGFNEQSLFSKYFSRVSGSSPESYRLYSTAD
>Mature_303_residues
MRICFINLIYMLFCMIQPVFTFDNLLQRLQLGKDATPFVIWHEKDLFGTHDNPVKIDLPCLFLCLDGEMLLDINLQPYCF
NREHLLCFTTPCACRIVSRSPGFRCVGLLLSKAFWRQLVHIERTLGKIAIRNAFIALNEDEHERLSRFYDLLCLCADASG
LKDSSGTLYPLILGMFCQVRNVCRRLEDTVIPASHSEKIFYDFLDLLHTHYCQQRRVSFYADELLLTPRHLTTVIRQVSG
RSAARWIEEYIVLEAQILLRNSSKAIKEIAYDLGFNEQSLFSKYFSRVSGSSPESYRLYSTAD

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35123; Mature: 35123

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRICFINLIYMLFCMIQPVFTFDNLLQRLQLGKDATPFVIWHEKDLFGTHDNPVKIDLPC
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCE
LFLCLDGEMLLDINLQPYCFNREHLLCFTTPCACRIVSRSPGFRCVGLLLSKAFWRQLVH
EEEEECCCEEEEECCCCEEECCCEEEEEECCHHEEEECCCCCHHHHHHHHHHHHHHHHHH
IERTLGKIAIRNAFIALNEDEHERLSRFYDLLCLCADASGLKDSSGTLYPLILGMFCQVR
HHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
NVCRRLEDTVIPASHSEKIFYDFLDLLHTHYCQQRRVSFYADELLLTPRHLTTVIRQVSG
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
RSAARWIEEYIVLEAQILLRNSSKAIKEIAYDLGFNEQSLFSKYFSRVSGSSPESYRLYS
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEE
TAD
CCC
>Mature Secondary Structure
MRICFINLIYMLFCMIQPVFTFDNLLQRLQLGKDATPFVIWHEKDLFGTHDNPVKIDLPC
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEECCE
LFLCLDGEMLLDINLQPYCFNREHLLCFTTPCACRIVSRSPGFRCVGLLLSKAFWRQLVH
EEEEECCCEEEEECCCCEEECCCEEEEEECCHHEEEECCCCCHHHHHHHHHHHHHHHHHH
IERTLGKIAIRNAFIALNEDEHERLSRFYDLLCLCADASGLKDSSGTLYPLILGMFCQVR
HHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
NVCRRLEDTVIPASHSEKIFYDFLDLLHTHYCQQRRVSFYADELLLTPRHLTTVIRQVSG
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
RSAARWIEEYIVLEAQILLRNSSKAIKEIAYDLGFNEQSLFSKYFSRVSGSSPESYRLYS
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEE
TAD
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA