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The map label for this gene is licD [H]

Identifier: 150010204

GI number: 150010204

Start: 4439947

End: 4440861

Strand: Direct

Name: licD [H]

Synonym: BDI_3627

Alternate gene names: 150010204

Gene position: 4439947-4440861 (Clockwise)

Preceding gene: 150010203

Following gene: 150010205

Centisome position: 92.28

GC content: 32.46

Gene sequence:

>915_bases
ATGAAACGAGTCGGAGATTATATAAATGCTAATTTGTCACAAATAAGTGTTCTTCGGGAACTTACTGATAAAGAAAGGGA
ACGATTGAGGAAGTGCTTGTTCTCCATATATAAGGATATAGCGTTAGTTTGTAGTAAATATGGGCTTTGTTTTATGTTAG
GAGGGGGATCTGTTTTAGGTGCGGTAAGACACAAGGGCTTTATTCCTTGGGATGATGATATCGATTTGATGATGCCTCGC
GAAGATTATATGAAATTTATTTCTGTTTTTAATAAAGAATTAGGAAATAAATATGATTTGTTTTATCCTTTCTCTAATGA
AGGAAACTTTCAATATTTTGTTCAGGTATCAAGAAAAGATACAATTCTTACGAAGGTGAATGAGTTGAAAAAAATGGGAG
TATTAATAGATATAACACCAATTGATTATGCTCCTAATTCTAGGTACTTGTCTAGATTGATTCATTTCTTAGTACAGATA
TTGAGGTCTATAATGTATGCGGTAAAATCTTATAAATCGAATGATGTCAATTATAAAGCTGTGATGTTTTGTTCTTTGAG
GACAAAAATTATTTATTGTATCGCAAAATGTATGGGTTTTATATTTTCTATTTTTCCTTTGAAATCTTATTATCGATTAT
ATGATAAATTGATATCGAAAATACATTTAAGCAGATTTATGACTATTGCTATGGGTAGGAAGTCTTATTGGGGAGAAAGA
CTACCTTGTGATGTTTTTTTACCGGTATCTAAGGGGATGTTTGAAGGTGTTGAGGTGAATTTGCCCTGTGATCCTGATAC
TTATTTGAGAAATTTGTATGGAGATTATATGCAAATCCCACCAGTAGAAAAACGTGAGCGCCACTTTTATACGGAGTTTG
ACTTGGGTGTTGAGTCCTCAAATGTTGGACAATAA

Upstream 100 bases:

>100_bases
CGGTCTTGGATTCTTCCAAATTAGAGTCTTTGGGTTGGAAGCCGTTTATCTTTTTAGAGGATGGATTGAATAGAGTTTTA
AATAGTATGATGTGTCATAA

Downstream 100 bases:

>100_bases
ATTATGTGTTTATGTTGATTAATAAAATTCGAAAATTTTTATTTGGAAAATTAGTCCATTTCTATCCATGGTATTTACGT
AATATATATAAGATGGATAT

Product: lipopolysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKRVGDYINANLSQISVLRELTDKERERLRKCLFSIYKDIALVCSKYGLCFMLGGGSVLGAVRHKGFIPWDDDIDLMMPR
EDYMKFISVFNKELGNKYDLFYPFSNEGNFQYFVQVSRKDTILTKVNELKKMGVLIDITPIDYAPNSRYLSRLIHFLVQI
LRSIMYAVKSYKSNDVNYKAVMFCSLRTKIIYCIAKCMGFIFSIFPLKSYYRLYDKLISKIHLSRFMTIAMGRKSYWGER
LPCDVFLPVSKGMFEGVEVNLPCDPDTYLRNLYGDYMQIPPVEKRERHFYTEFDLGVESSNVGQ

Sequences:

>Translated_304_residues
MKRVGDYINANLSQISVLRELTDKERERLRKCLFSIYKDIALVCSKYGLCFMLGGGSVLGAVRHKGFIPWDDDIDLMMPR
EDYMKFISVFNKELGNKYDLFYPFSNEGNFQYFVQVSRKDTILTKVNELKKMGVLIDITPIDYAPNSRYLSRLIHFLVQI
LRSIMYAVKSYKSNDVNYKAVMFCSLRTKIIYCIAKCMGFIFSIFPLKSYYRLYDKLISKIHLSRFMTIAMGRKSYWGER
LPCDVFLPVSKGMFEGVEVNLPCDPDTYLRNLYGDYMQIPPVEKRERHFYTEFDLGVESSNVGQ
>Mature_304_residues
MKRVGDYINANLSQISVLRELTDKERERLRKCLFSIYKDIALVCSKYGLCFMLGGGSVLGAVRHKGFIPWDDDIDLMMPR
EDYMKFISVFNKELGNKYDLFYPFSNEGNFQYFVQVSRKDTILTKVNELKKMGVLIDITPIDYAPNSRYLSRLIHFLVQI
LRSIMYAVKSYKSNDVNYKAVMFCSLRTKIIYCIAKCMGFIFSIFPLKSYYRLYDKLISKIHLSRFMTIAMGRKSYWGER
LPCDVFLPVSKGMFEGVEVNLPCDPDTYLRNLYGDYMQIPPVEKRERHFYTEFDLGVESSNVGQ

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 35548; Mature: 35548

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVGDYINANLSQISVLRELTDKERERLRKCLFSIYKDIALVCSKYGLCFMLGGGSVLG
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
AVRHKGFIPWDDDIDLMMPREDYMKFISVFNKELGNKYDLFYPFSNEGNFQYFVQVSRKD
HHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCC
TILTKVNELKKMGVLIDITPIDYAPNSRYLSRLIHFLVQILRSIMYAVKSYKSNDVNYKA
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
VMFCSLRTKIIYCIAKCMGFIFSIFPLKSYYRLYDKLISKIHLSRFMTIAMGRKSYWGER
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
LPCDVFLPVSKGMFEGVEVNLPCDPDTYLRNLYGDYMQIPPVEKRERHFYTEFDLGVESS
CCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHCCCEECCCCCHHHHCEEEHCCCCCCCC
NVGQ
CCCC
>Mature Secondary Structure
MKRVGDYINANLSQISVLRELTDKERERLRKCLFSIYKDIALVCSKYGLCFMLGGGSVLG
CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
AVRHKGFIPWDDDIDLMMPREDYMKFISVFNKELGNKYDLFYPFSNEGNFQYFVQVSRKD
HHHHCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCCC
TILTKVNELKKMGVLIDITPIDYAPNSRYLSRLIHFLVQILRSIMYAVKSYKSNDVNYKA
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
VMFCSLRTKIIYCIAKCMGFIFSIFPLKSYYRLYDKLISKIHLSRFMTIAMGRKSYWGER
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
LPCDVFLPVSKGMFEGVEVNLPCDPDTYLRNLYGDYMQIPPVEKRERHFYTEFDLGVESS
CCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHCCCEECCCCCHHHHCEEEHCCCCCCCC
NVGQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]