| Definition | Parabacteroides distasonis ATCC 8503 chromosome, complete genome. |
|---|---|
| Accession | NC_009615 |
| Length | 4,811,379 |
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The map label for this gene is 150010163
Identifier: 150010163
GI number: 150010163
Start: 4393495
End: 4395369
Strand: Direct
Name: 150010163
Synonym: BDI_3586
Alternate gene names: NA
Gene position: 4393495-4395369 (Clockwise)
Preceding gene: 150010162
Following gene: 150010164
Centisome position: 91.31
GC content: 46.24
Gene sequence:
>1875_bases ATGAAAAAAGTTCTTATATATTTTGCGATGGCGGTGGTTCTCGCGTTAGGCAGCACATCTTGTTCCGATTTCTTGGAGAT CGAACCAGTAGGTGCGGTTAATGAAACCAATTTAACGGATCAGGAAGGTATTAATTATCTTCTTACCGGCATGTATTCAG CGTTAAATATTCCGGCGGCTACGACTAACTCTTATTTTGGGGCAAGCTTGACAAACTATACGTATGGTGATGTGATGGGC GGTGACGCTAATAAGGGGTCAACGGCTGCGGACCAATCGGACTTCACGTTGTTGGAGACTTTTAGCTTTACGACCGATAA TTCCTATATCAAGCGTAAATGGGTGGCAGTATACGATGCGGTGGCTCGTGCTAATAATGTCATGCATTTGGCCGGTTTGA TTAAAGATGAGCTTTCCGCTATACCGGGACAGGAGAAAGATTTTTATACCGAGGCCATAGCCCAAGCTCGTTTCATGCGT GGTTTTTATTTGTTTGAGGGTATCAAGAATTTTGGGGCGGCTATTCCTTATGTATCTTTGGAGGATTATGAGTCGTCCGT GAACCCACTGATATCGAATGTGGATGAGAGCGGTAACTATATTTATATTTGGGAACAGGTGGCTGAAGATTTGCAGTATG CTTATGATAATCTTCCCGGCGCATGGCCGGAAGAGCCCGGTCGTGCCAACAAATGGGCGGCTGGAGCGTTTTTGGCGAAA CTGAGAATATTCCAGTCTTCTCCCTATAATGGAACGAATGGAACCTCCAACAAATGGACGGAGGCTAAATCGATTTTAGA AACGGTTATCGCTAATGGTACGGATAGCAAGGGCACGAAATATACCTTGACCCCGAGTTATGAGACGCTTTACACGGCGG GCGAGAGCGACTGGACGGGCGAGTCTGTGTTTGACGTCCAGATGGCAATCTCCGGTACGCAGTATTATACCAATGCGATC AATGGTAACTCTCATATCTCATTGTCTGGCAAGATTGGTTCCGGCTGGGGATTCTACCAGCCTTCTTATGACTTGGTGAA TGCGCATATGGTGGATGAATATGGACTGCCTTATCTCGATAAGTCGTATCAAAGCAAAACCTCGGTTACAACAATTGATG GCGATAATGTACCTCATACGGATTTGACGGTTTATACGGATCCTCGGGTTGACGTATCTGCGGGTCGTTTCAATGTCCCC TATATGGATTGGGATATACCGGTTACTATCGATGGCTGGATTCGTGATTTGGCGAATGGCGGTCCGTTCTTGAATAAGAA GAATCTGCCGAAAAAGGCGGATAAGGGAGGCTTGAGCTTGACTACAACCGGTGGCTCAACTGCCAAGAACTTCCACTTGA TGCGTGTAGCTGAGCTTTACCTGCTTTATGCTGAGGCTTGTATAGAAACGGGTGATATCAATACTGCCAGAGAATATATC AACAAAGTTCGCGCACGTGCCGCACAAAGTTGTATCATGGCTGCCGACGCGAATAACAATATGGCTTTAACTTCTTCTCC ATATGTATTGGAGGATAAGGTGAGCGGAAATACCATTGCTAATACGGCGGCTAATTATCGCATCGGCTTGTATCCCGCGA GTGGCTGGACAGTGGATAAGGCGATAAAAGCCTTGCGTTTCGAGCGTAGGATCGAGTTGGCGATGGAGGGGCATCATTGG TATGATCTTGTGCGCTGGAATGCGGCTTCTGAGGAGCTGGGTAATAAAGGTTCGGGCTTCTTGGCTTATGAAAAGAGATA TTTGCTGAAGTACCAATCGGCTACGTATCCGGATAGATTAGTGACACTTCCGATCCCTAACGATGAAATTGTCACCATGG AAGGCGTATTAGTCCAGAATGAGAACTGGAAATAA
Upstream 100 bases:
>100_bases TATCGATTATGGATCTTATGGTATGCCTCGTCAGTTCTTGATGGGTGTGAATGTGACATTCTAACGTATGTGCTTTATAA ACGATTAATTTGAATTCATT
Downstream 100 bases:
>100_bases ATTGTAGGTTGATAATCATTGTGGGCCGGGCATGTGATATGTCCGGCCTTTTGTATATTTGTACCGTGAATTCAACAACC CGGTGAGGTTCGGTGTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: Outer Membrane Protein; Ragb/Susd Domain Protein; RagB/SusD Domain-Containing Protein; RagB/SusD Family Protein; SusD Family Protein; Lipoprotein
Number of amino acids: Translated: 624; Mature: 624
Protein sequence:
>624_residues MKKVLIYFAMAVVLALGSTSCSDFLEIEPVGAVNETNLTDQEGINYLLTGMYSALNIPAATTNSYFGASLTNYTYGDVMG GDANKGSTAADQSDFTLLETFSFTTDNSYIKRKWVAVYDAVARANNVMHLAGLIKDELSAIPGQEKDFYTEAIAQARFMR GFYLFEGIKNFGAAIPYVSLEDYESSVNPLISNVDESGNYIYIWEQVAEDLQYAYDNLPGAWPEEPGRANKWAAGAFLAK LRIFQSSPYNGTNGTSNKWTEAKSILETVIANGTDSKGTKYTLTPSYETLYTAGESDWTGESVFDVQMAISGTQYYTNAI NGNSHISLSGKIGSGWGFYQPSYDLVNAHMVDEYGLPYLDKSYQSKTSVTTIDGDNVPHTDLTVYTDPRVDVSAGRFNVP YMDWDIPVTIDGWIRDLANGGPFLNKKNLPKKADKGGLSLTTTGGSTAKNFHLMRVAELYLLYAEACIETGDINTAREYI NKVRARAAQSCIMAADANNNMALTSSPYVLEDKVSGNTIANTAANYRIGLYPASGWTVDKAIKALRFERRIELAMEGHHW YDLVRWNAASEELGNKGSGFLAYEKRYLLKYQSATYPDRLVTLPIPNDEIVTMEGVLVQNENWK
Sequences:
>Translated_624_residues MKKVLIYFAMAVVLALGSTSCSDFLEIEPVGAVNETNLTDQEGINYLLTGMYSALNIPAATTNSYFGASLTNYTYGDVMG GDANKGSTAADQSDFTLLETFSFTTDNSYIKRKWVAVYDAVARANNVMHLAGLIKDELSAIPGQEKDFYTEAIAQARFMR GFYLFEGIKNFGAAIPYVSLEDYESSVNPLISNVDESGNYIYIWEQVAEDLQYAYDNLPGAWPEEPGRANKWAAGAFLAK LRIFQSSPYNGTNGTSNKWTEAKSILETVIANGTDSKGTKYTLTPSYETLYTAGESDWTGESVFDVQMAISGTQYYTNAI NGNSHISLSGKIGSGWGFYQPSYDLVNAHMVDEYGLPYLDKSYQSKTSVTTIDGDNVPHTDLTVYTDPRVDVSAGRFNVP YMDWDIPVTIDGWIRDLANGGPFLNKKNLPKKADKGGLSLTTTGGSTAKNFHLMRVAELYLLYAEACIETGDINTAREYI NKVRARAAQSCIMAADANNNMALTSSPYVLEDKVSGNTIANTAANYRIGLYPASGWTVDKAIKALRFERRIELAMEGHHW YDLVRWNAASEELGNKGSGFLAYEKRYLLKYQSATYPDRLVTLPIPNDEIVTMEGVLVQNENWK >Mature_624_residues MKKVLIYFAMAVVLALGSTSCSDFLEIEPVGAVNETNLTDQEGINYLLTGMYSALNIPAATTNSYFGASLTNYTYGDVMG GDANKGSTAADQSDFTLLETFSFTTDNSYIKRKWVAVYDAVARANNVMHLAGLIKDELSAIPGQEKDFYTEAIAQARFMR GFYLFEGIKNFGAAIPYVSLEDYESSVNPLISNVDESGNYIYIWEQVAEDLQYAYDNLPGAWPEEPGRANKWAAGAFLAK LRIFQSSPYNGTNGTSNKWTEAKSILETVIANGTDSKGTKYTLTPSYETLYTAGESDWTGESVFDVQMAISGTQYYTNAI NGNSHISLSGKIGSGWGFYQPSYDLVNAHMVDEYGLPYLDKSYQSKTSVTTIDGDNVPHTDLTVYTDPRVDVSAGRFNVP YMDWDIPVTIDGWIRDLANGGPFLNKKNLPKKADKGGLSLTTTGGSTAKNFHLMRVAELYLLYAEACIETGDINTAREYI NKVRARAAQSCIMAADANNNMALTSSPYVLEDKVSGNTIANTAANYRIGLYPASGWTVDKAIKALRFERRIELAMEGHHW YDLVRWNAASEELGNKGSGFLAYEKRYLLKYQSATYPDRLVTLPIPNDEIVTMEGVLVQNENWK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68927; Mature: 68927
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVLIYFAMAVVLALGSTSCSDFLEIEPVGAVNETNLTDQEGINYLLTGMYSALNIPAA CCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCC TTNSYFGASLTNYTYGDVMGGDANKGSTAADQSDFTLLETFSFTTDNSYIKRKWVAVYDA CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH VARANNVMHLAGLIKDELSAIPGQEKDFYTEAIAQARFMRGFYLFEGIKNFGAAIPYVSL HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEH EDYESSVNPLISNVDESGNYIYIWEQVAEDLQYAYDNLPGAWPEEPGRANKWAAGAFLAK HHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH LRIFQSSPYNGTNGTSNKWTEAKSILETVIANGTDSKGTKYTLTPSYETLYTAGESDWTG HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCC ESVFDVQMAISGTQYYTNAINGNSHISLSGKIGSGWGFYQPSYDLVNAHMVDEYGLPYLD CCEEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHEEEEHHHCCCCCCC KSYQSKTSVTTIDGDNVPHTDLTVYTDPRVDVSAGRFNVPYMDWDIPVTIDGWIRDLANG CCCCCCCCEEEECCCCCCCCCEEEEECCCEEECCCEEECCEECCCCCEEEHHHHHHHCCC GPFLNKKNLPKKADKGGLSLTTTGGSTAKNFHLMRVAELYLLYAEACIETGDINTAREYI CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH NKVRARAAQSCIMAADANNNMALTSSPYVLEDKVSGNTIANTAANYRIGLYPASGWTVDK HHHHHHHHHHEEEEECCCCCEEEECCCEEEECCCCCCEEECCCCCEEEEEEECCCCCHHH AIKALRFERRIELAMEGHHWYDLVRWNAASEELGNKGSGFLAYEKRYLLKYQSATYPDRL HHHHHHHHHHEEEEECCCCEEEEEEECCCHHHHCCCCCCEEEECCEEEEEECCCCCCCEE VTLPIPNDEIVTMEGVLVQNENWK EEEECCCCCEEEEEEEEEECCCCC >Mature Secondary Structure MKKVLIYFAMAVVLALGSTSCSDFLEIEPVGAVNETNLTDQEGINYLLTGMYSALNIPAA CCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCC TTNSYFGASLTNYTYGDVMGGDANKGSTAADQSDFTLLETFSFTTDNSYIKRKWVAVYDA CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHH VARANNVMHLAGLIKDELSAIPGQEKDFYTEAIAQARFMRGFYLFEGIKNFGAAIPYVSL HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEH EDYESSVNPLISNVDESGNYIYIWEQVAEDLQYAYDNLPGAWPEEPGRANKWAAGAFLAK HHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH LRIFQSSPYNGTNGTSNKWTEAKSILETVIANGTDSKGTKYTLTPSYETLYTAGESDWTG HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEEECCCCCCCC ESVFDVQMAISGTQYYTNAINGNSHISLSGKIGSGWGFYQPSYDLVNAHMVDEYGLPYLD CCEEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHEEEEHHHCCCCCCC KSYQSKTSVTTIDGDNVPHTDLTVYTDPRVDVSAGRFNVPYMDWDIPVTIDGWIRDLANG CCCCCCCCEEEECCCCCCCCCEEEEECCCEEECCCEEECCEECCCCCEEEHHHHHHHCCC GPFLNKKNLPKKADKGGLSLTTTGGSTAKNFHLMRVAELYLLYAEACIETGDINTAREYI CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH NKVRARAAQSCIMAADANNNMALTSSPYVLEDKVSGNTIANTAANYRIGLYPASGWTVDK HHHHHHHHHHEEEEECCCCCEEEECCCEEEECCCCCCEEECCCCCEEEEEEECCCCCHHH AIKALRFERRIELAMEGHHWYDLVRWNAASEELGNKGSGFLAYEKRYLLKYQSATYPDRL HHHHHHHHHHEEEEECCCCEEEEEEECCCHHHHCCCCCCEEEECCEEEEEECCCCCCCEE VTLPIPNDEIVTMEGVLVQNENWK EEEECCCCCEEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA