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The map label for this gene is xerD [C]

Identifier: 150010080

GI number: 150010080

Start: 4287472

End: 4288680

Strand: Direct

Name: xerD [C]

Synonym: BDI_3500

Alternate gene names: 150010080

Gene position: 4287472-4288680 (Clockwise)

Preceding gene: 150010079

Following gene: 150010081

Centisome position: 89.11

GC content: 41.11

Gene sequence:

>1209_bases
ATGAGAAGTACATTTAAGACTGTCTTCTATGTAAATGGAAGCAAAGAGAAGAGTGGAATTGTCCCTATCATGGGACGGGT
TACCATCAATGGGACGATTGCTCAGTTCAGTTGTAAACAGAGTATATCCAAGGAGTTATGGGATGCCAAAGCTAATCGGG
CTAAAGGTAAGAGCCGTAAGTCTATGGATGTTAATCATGCGCTTGATAATATCAAGGCGCAGATAGCAAAGCATTACCAG
CGGCTTTCTGACCGGGAGGCATTTGTAACTGCCGAAATGGTACGCAATGCCTATCAAGGTATCGGCACAGAGTATGAAAC
GGTGTTACGTGCCTTTGATAAGATGAATGCGGATTTTGCCAAACGTGTTGGGAAAGACCGTTCGGAGCGTACATACCGTA
AATATCTTACCGTAAGGAAATATGTCGCCGAATTTATGAAAAACCATTATAAGCGTTCGGATATGGGGATGAATGAACTG
ACGGAAGAGTTTATCCATGATTATTGTCTGTATCTACGTAACGAGGTCGGACTTGCCCAATCTTCCGTATGGATATATTC
CATACCATTGAAGCATATCGTAACTTCCGCTCATTACCACGGGAAGATACCGAGAAATCCATTTGCACAATATCATGTGA
ATCCTGACCATAAGGAACGTGGCTTCTTGACAGAGAACGAAATCAAAGCCATGAGTACAATCGAATTGGAAAATGCCAAT
TTCGCTATTGCAAGGGACATTTTTATTTTCGGATGCTGGACGGGTATATCATTCGTGGACATCAAAAATCTCACCACAGA
CAATATCGTGGAACTGAATGGCTCACGTTGGATTGTATCCAAAAGGCAGAAAACAGGTGTGCCGTTTCAAATCAAGCTGA
TGGACATTCCCGCTCAAATAATTGAGCGAAATAAGCCATTCAGAAATGGTAAGAATTTGTTCAACATAAATTCTTACGAC
ATGGTAAATAGGCGCATCAAGACTGTGGCAAAAATGTGTGGAATAGAAAAGAACATTTCATTTCACCTGAGCCGGCATTC
CTTCGCTGTTTTAGCCCTTAATTATGGTATGCCAATAGAAAGTGTCAGCAAAATACTCGGACATACAAATATCACTACTA
CGCAGATTTATGCAAAAGTGACCAACACGAAACTTGAAAACGACATTTCTGCTTTTGAAGATAAGGTTAGCGGACATTTC
ACCATATAA

Upstream 100 bases:

>100_bases
TTTAACACTAACTTCCTATTTTTCTGCGTTCTGCGTAGGTTTGCGTTCTGCCCTTATGACTCTCATGATTTAATTTTGCA
CCAAACAAAAAGCAAGGATT

Downstream 100 bases:

>100_bases
AGAATGGCTTATGAAAAGAAGTATTATAACAATGAGTGAATCCGGCAATATCATAATGCCGGACAATGTCACAGACATTT
GGATGAGCGAACAGGAACTT

Product: integrase

Products: NA

Alternate protein names: Tyrosine Type Site-Specific Recombinase; Transposase; Integrase Family Protein; Site-Specific Recombinase; Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family; Bacteriophage Integrase; Phage Integrase; Integrase/Transposase; Integrase Protein; Mobilizable Transposon Int Protein; Mobilizable Transposon Protein Int Protein; Prophage; Mobilizable Transposon

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MRSTFKTVFYVNGSKEKSGIVPIMGRVTINGTIAQFSCKQSISKELWDAKANRAKGKSRKSMDVNHALDNIKAQIAKHYQ
RLSDREAFVTAEMVRNAYQGIGTEYETVLRAFDKMNADFAKRVGKDRSERTYRKYLTVRKYVAEFMKNHYKRSDMGMNEL
TEEFIHDYCLYLRNEVGLAQSSVWIYSIPLKHIVTSAHYHGKIPRNPFAQYHVNPDHKERGFLTENEIKAMSTIELENAN
FAIARDIFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGVPFQIKLMDIPAQIIERNKPFRNGKNLFNINSYD
MVNRRIKTVAKMCGIEKNISFHLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKLENDISAFEDKVSGHF
TI

Sequences:

>Translated_402_residues
MRSTFKTVFYVNGSKEKSGIVPIMGRVTINGTIAQFSCKQSISKELWDAKANRAKGKSRKSMDVNHALDNIKAQIAKHYQ
RLSDREAFVTAEMVRNAYQGIGTEYETVLRAFDKMNADFAKRVGKDRSERTYRKYLTVRKYVAEFMKNHYKRSDMGMNEL
TEEFIHDYCLYLRNEVGLAQSSVWIYSIPLKHIVTSAHYHGKIPRNPFAQYHVNPDHKERGFLTENEIKAMSTIELENAN
FAIARDIFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGVPFQIKLMDIPAQIIERNKPFRNGKNLFNINSYD
MVNRRIKTVAKMCGIEKNISFHLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKLENDISAFEDKVSGHF
TI
>Mature_402_residues
MRSTFKTVFYVNGSKEKSGIVPIMGRVTINGTIAQFSCKQSISKELWDAKANRAKGKSRKSMDVNHALDNIKAQIAKHYQ
RLSDREAFVTAEMVRNAYQGIGTEYETVLRAFDKMNADFAKRVGKDRSERTYRKYLTVRKYVAEFMKNHYKRSDMGMNEL
TEEFIHDYCLYLRNEVGLAQSSVWIYSIPLKHIVTSAHYHGKIPRNPFAQYHVNPDHKERGFLTENEIKAMSTIELENAN
FAIARDIFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGVPFQIKLMDIPAQIIERNKPFRNGKNLFNINSYD
MVNRRIKTVAKMCGIEKNISFHLSRHSFAVLALNYGMPIESVSKILGHTNITTTQIYAKVTNTKLENDISAFEDKVSGHF
TI

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46200; Mature: 46200

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTFKTVFYVNGSKEKSGIVPIMGRVTINGTIAQFSCKQSISKELWDAKANRAKGKSRK
CCCCEEEEEEEECCCCCCCCCEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
SMDVNHALDNIKAQIAKHYQRLSDREAFVTAEMVRNAYQGIGTEYETVLRAFDKMNADFA
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
KRVGKDRSERTYRKYLTVRKYVAEFMKNHYKRSDMGMNELTEEFIHDYCLYLRNEVGLAQ
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
SSVWIYSIPLKHIVTSAHYHGKIPRNPFAQYHVNPDHKERGFLTENEIKAMSTIELENAN
CCEEEEECCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHEEEEEECCCC
FAIARDIFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGVPFQIKLMDIPAQI
EEEEEHEEEEEEECCCEEEEECCCCCCCEEEECCCEEEEECHHCCCCCEEEEEECCCHHH
IERNKPFRNGKNLFNINSYDMVNRRIKTVAKMCGIEKNISFHLSRHSFAVLALNYGMPIE
HHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCHH
SVSKILGHTNITTTQIYAKVTNTKLENDISAFEDKVSGHFTI
HHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSTFKTVFYVNGSKEKSGIVPIMGRVTINGTIAQFSCKQSISKELWDAKANRAKGKSRK
CCCCEEEEEEEECCCCCCCCCEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
SMDVNHALDNIKAQIAKHYQRLSDREAFVTAEMVRNAYQGIGTEYETVLRAFDKMNADFA
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
KRVGKDRSERTYRKYLTVRKYVAEFMKNHYKRSDMGMNELTEEFIHDYCLYLRNEVGLAQ
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
SSVWIYSIPLKHIVTSAHYHGKIPRNPFAQYHVNPDHKERGFLTENEIKAMSTIELENAN
CCEEEEECCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHEEEEEECCCC
FAIARDIFIFGCWTGISFVDIKNLTTDNIVELNGSRWIVSKRQKTGVPFQIKLMDIPAQI
EEEEEHEEEEEEECCCEEEEECCCCCCCEEEECCCEEEEECHHCCCCCEEEEEECCCHHH
IERNKPFRNGKNLFNINSYDMVNRRIKTVAKMCGIEKNISFHLSRHSFAVLALNYGMPIE
HHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCCCHH
SVSKILGHTNITTTQIYAKVTNTKLENDISAFEDKVSGHFTI
HHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA