Definition Parabacteroides distasonis ATCC 8503 chromosome, complete genome.
Accession NC_009615
Length 4,811,379

Click here to switch to the map view.

The map label for this gene is 150010000

Identifier: 150010000

GI number: 150010000

Start: 4161281

End: 4162399

Strand: Direct

Name: 150010000

Synonym: BDI_3419

Alternate gene names: NA

Gene position: 4161281-4162399 (Clockwise)

Preceding gene: 150009999

Following gene: 150010001

Centisome position: 86.49

GC content: 43.52

Gene sequence:

>1119_bases
ATGCGATTACTGATTCTCTTAGGGTTCGCTTTCTGGATGGTGGCATGTACGCCATCCGGAAAGCAAACTTCTTCCAAGGA
AGCTCTTTCCTCTGATAGAATTCAATATGCCCAAGGTTTCACGGTTCAGCGCTTTGATACCTATACAATGGTGGAAGTTC
GTGATCCGTGGGATAGTACTCGTCTGCTTCAACGCTATTTATTGGTAGACCGGACAAAGTCGGTTCCTGGCGGATTACCC
AAAGGGACGATCGTGAAGGTCCCGGTAAAAGATATTGTGGTTTATACTTCTGTTCATGCGGCTATTATTGATCAATTGCA
CGAAATCAATAAGGTTATAGGTGTTTGTGAGCCTCGTTATATGGATACTCCTGCCATACAAGAGGGTATACAGGCCGGAA
GAATCGCTGATTTAGGTGAGGCTACCTCTCCGAATATAGAGAAAATGATAGAGATCGGTGCGGAACTCGTGATAGCTTCC
CCGTTTCAGAACAGTAGTTATGGGCCTGTCGAGAAGATAGGGATACCCATTATCGAAGGAGCCGACTATATGGAGGCATT
TCCTTTGGGGCGCACGGAGTGGATTCGCTTTTATGGTTTGCTATTCGGAAAGGAAGAGATGGCCGATTCTATATTTAAAG
AAACAGAGCAAGCCTATTTGTCCCTAAAGAACTTAACCGTGAATATAGATAAGCGTCCTACTGTTTTGTCGGAGAAAAAG
TTCGGTTCCTCATGGTATATACCGGCTGGAGATAGTTATATGGCCCATCTTTTCGAGGATGCAGGAGCCGATTATATGTT
TAAGGATTTACCGGGTGCCGGAAGTACCCCCTTAGCGTTTGAGACCGTGTTTGATAAAGCGATCCATGCGGATATTTGGC
TTGTTAAATATAATCAGTCTTCCGAGATGACCTATAACGATTTACGCTCCGAATATACTCCCTACGAGAATTTCGACGCT
TTTAAAAAACAACGGATTTATACCTGTAATACAGGGATAGTTCCTTATTACGAGGAATTCCCATTACATCCGGAATATCT
ATTGAAAGATTTAATCTGGATTTTCCATCCGGAGCTAGTACCCGGATATTCTCCCCGTTATTTTAGTAAAATGCCCTGA

Upstream 100 bases:

>100_bases
GCGATATTTATTGTTTCGGAGGTGACGGTAAATTGTTCAAGAAGTTTGAGGCCGGTTTAAATCCCATGAAAGTAGTCCTC
GCTCAAAAAGATAATATCTA

Downstream 100 bases:

>100_bases
TTGTCTTAAAGGTTTCATATCTTTGTTGAAATGTCGTTACTAGACAAATAAAGGTATTAGACTATGAAGATAAAAAAGGT
ATATGTTGATGTTTTAACTG

Product: iron(III) ABC transporter periplasmic iron-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MRLLILLGFAFWMVACTPSGKQTSSKEALSSDRIQYAQGFTVQRFDTYTMVEVRDPWDSTRLLQRYLLVDRTKSVPGGLP
KGTIVKVPVKDIVVYTSVHAAIIDQLHEINKVIGVCEPRYMDTPAIQEGIQAGRIADLGEATSPNIEKMIEIGAELVIAS
PFQNSSYGPVEKIGIPIIEGADYMEAFPLGRTEWIRFYGLLFGKEEMADSIFKETEQAYLSLKNLTVNIDKRPTVLSEKK
FGSSWYIPAGDSYMAHLFEDAGADYMFKDLPGAGSTPLAFETVFDKAIHADIWLVKYNQSSEMTYNDLRSEYTPYENFDA
FKKQRIYTCNTGIVPYYEEFPLHPEYLLKDLIWIFHPELVPGYSPRYFSKMP

Sequences:

>Translated_372_residues
MRLLILLGFAFWMVACTPSGKQTSSKEALSSDRIQYAQGFTVQRFDTYTMVEVRDPWDSTRLLQRYLLVDRTKSVPGGLP
KGTIVKVPVKDIVVYTSVHAAIIDQLHEINKVIGVCEPRYMDTPAIQEGIQAGRIADLGEATSPNIEKMIEIGAELVIAS
PFQNSSYGPVEKIGIPIIEGADYMEAFPLGRTEWIRFYGLLFGKEEMADSIFKETEQAYLSLKNLTVNIDKRPTVLSEKK
FGSSWYIPAGDSYMAHLFEDAGADYMFKDLPGAGSTPLAFETVFDKAIHADIWLVKYNQSSEMTYNDLRSEYTPYENFDA
FKKQRIYTCNTGIVPYYEEFPLHPEYLLKDLIWIFHPELVPGYSPRYFSKMP
>Mature_372_residues
MRLLILLGFAFWMVACTPSGKQTSSKEALSSDRIQYAQGFTVQRFDTYTMVEVRDPWDSTRLLQRYLLVDRTKSVPGGLP
KGTIVKVPVKDIVVYTSVHAAIIDQLHEINKVIGVCEPRYMDTPAIQEGIQAGRIADLGEATSPNIEKMIEIGAELVIAS
PFQNSSYGPVEKIGIPIIEGADYMEAFPLGRTEWIRFYGLLFGKEEMADSIFKETEQAYLSLKNLTVNIDKRPTVLSEKK
FGSSWYIPAGDSYMAHLFEDAGADYMFKDLPGAGSTPLAFETVFDKAIHADIWLVKYNQSSEMTYNDLRSEYTPYENFDA
FKKQRIYTCNTGIVPYYEEFPLHPEYLLKDLIWIFHPELVPGYSPRYFSKMP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 42275; Mature: 42275

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLILLGFAFWMVACTPSGKQTSSKEALSSDRIQYAQGFTVQRFDTYTMVEVRDPWDST
CEEHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCHH
RLLQRYLLVDRTKSVPGGLPKGTIVKVPVKDIVVYTSVHAAIIDQLHEINKVIGVCEPRY
HHHHHHHHHHCCCCCCCCCCCCCEEEECHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
MDTPAIQEGIQAGRIADLGEATSPNIEKMIEIGAELVIASPFQNSSYGPVEKIGIPIIEG
CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCHHHCCCEEECC
ADYMEAFPLGRTEWIRFYGLLFGKEEMADSIFKETEQAYLSLKNLTVNIDKRPTVLSEKK
CCHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEEECEEEEECCCCCEECHHC
FGSSWYIPAGDSYMAHLFEDAGADYMFKDLPGAGSTPLAFETVFDKAIHADIWLVKYNQS
CCCEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCEEEEEEECCC
SEMTYNDLRSEYTPYENFDAFKKQRIYTCNTGIVPYYEEFPLHPEYLLKDLIWIFHPELV
CCCCHHHHHHHCCCCCCHHHHHHCEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHCCCCC
PGYSPRYFSKMP
CCCCCCCCCCCC
>Mature Secondary Structure
MRLLILLGFAFWMVACTPSGKQTSSKEALSSDRIQYAQGFTVQRFDTYTMVEVRDPWDST
CEEHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCHH
RLLQRYLLVDRTKSVPGGLPKGTIVKVPVKDIVVYTSVHAAIIDQLHEINKVIGVCEPRY
HHHHHHHHHHCCCCCCCCCCCCCEEEECHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCC
MDTPAIQEGIQAGRIADLGEATSPNIEKMIEIGAELVIASPFQNSSYGPVEKIGIPIIEG
CCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCHHHCCCEEECC
ADYMEAFPLGRTEWIRFYGLLFGKEEMADSIFKETEQAYLSLKNLTVNIDKRPTVLSEKK
CCHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEEECEEEEECCCCCEECHHC
FGSSWYIPAGDSYMAHLFEDAGADYMFKDLPGAGSTPLAFETVFDKAIHADIWLVKYNQS
CCCEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHCEEEEEEECCC
SEMTYNDLRSEYTPYENFDAFKKQRIYTCNTGIVPYYEEFPLHPEYLLKDLIWIFHPELV
CCCCHHHHHHHCCCCCCHHHHHHCEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHCCCCC
PGYSPRYFSKMP
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]