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The map label for this gene is sdhB [H]

Identifier: 150009792

GI number: 150009792

Start: 3884821

End: 3885576

Strand: Reverse

Name: sdhB [H]

Synonym: BDI_3208

Alternate gene names: 150009792

Gene position: 3885576-3884821 (Counterclockwise)

Preceding gene: 150009793

Following gene: 150009791

Centisome position: 80.76

GC content: 49.21

Gene sequence:

>756_bases
ATGGATAAAGATATAAGTGTAACACTTAAGGTTTGGCGTCAGAGAGGTCCGAAGGAGAAAGGACAGTTCGAGACATACAA
AATTGAGAAGATCAATCAGAGTGTCTCTTTCTTGGAAATGTTGGATATCTTGAACGAGCAGTTGGTCAACGAGGGTAAGG
AACCGATCGTATTCGATCACGACTGCCGCGAGGGTATCTGTGGCATGTGTTCATTGTATGTAAACGGACACCCGCACGGA
CCGGCAACTGGAGCTACGACTTGCCAGTTATATATGCGTCGTTTCCACGATGGAGAGACGATCACGATCGAACCGTGGCG
TTCCGCAGGTTTCCCTGTTATCCGCGACTTGATGGTAGACCGCTACGCTTACGACAAAATCATCCAAGCGGGTGGTTTCA
CATCTGTCAACACAGGTGGTGTACCCGACGCTAATGCGATACCTATCCCAAAGAAGGACGCAGACTTAGCCATGGACGCT
GCCGCTTGTATCGGTTGTGGCGCTTGTGCTGCCGCTTGTAAGAATGGTTCCGCTATGTTATTCGTATCCGCTAAGGTTAG
CCAGCTGGCTTTGTTGCCTCAAGGTAAAGTCGAGGCTGCTCGCCGTGCCAAAGCTATGGTCGCTAAAATGGATGAGCTTG
GCTTCGGTAACTGTACGAACACACGTGCTTGCGAGATGGAATGTCCGAAGAATATCTCCGTTAGCAACATCGCTCGTTTG
AACCGCGAGTTCATTTGCGCTAAATTACAAGACTAA

Upstream 100 bases:

>100_bases
TCCTGTCATGTTGAAAGAGGATTTGAACTATGAGTTCGTTGTTCCTCAAACACGTAACTACAAGAAGTAATAATCATCAA
TCTCAGAAAAAATTAGAATC

Downstream 100 bases:

>100_bases
TATTTGATTAGTATATCATGGAAAAGGCGTCTTTCTCTAAAAGAAAGGCGCCTTTTTGTTTTTGTTATATGTCGTAAAAC
ATAATTTAGCATTATAACCC

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDKDISVTLKVWRQRGPKEKGQFETYKIEKINQSVSFLEMLDILNEQLVNEGKEPIVFDHDCREGICGMCSLYVNGHPHG
PATGATTCQLYMRRFHDGETITIEPWRSAGFPVIRDLMVDRYAYDKIIQAGGFTSVNTGGVPDANAIPIPKKDADLAMDA
AACIGCGACAAACKNGSAMLFVSAKVSQLALLPQGKVEAARRAKAMVAKMDELGFGNCTNTRACEMECPKNISVSNIARL
NREFICAKLQD

Sequences:

>Translated_251_residues
MDKDISVTLKVWRQRGPKEKGQFETYKIEKINQSVSFLEMLDILNEQLVNEGKEPIVFDHDCREGICGMCSLYVNGHPHG
PATGATTCQLYMRRFHDGETITIEPWRSAGFPVIRDLMVDRYAYDKIIQAGGFTSVNTGGVPDANAIPIPKKDADLAMDA
AACIGCGACAAACKNGSAMLFVSAKVSQLALLPQGKVEAARRAKAMVAKMDELGFGNCTNTRACEMECPKNISVSNIARL
NREFICAKLQD
>Mature_251_residues
MDKDISVTLKVWRQRGPKEKGQFETYKIEKINQSVSFLEMLDILNEQLVNEGKEPIVFDHDCREGICGMCSLYVNGHPHG
PATGATTCQLYMRRFHDGETITIEPWRSAGFPVIRDLMVDRYAYDKIIQAGGFTSVNTGGVPDANAIPIPKKDADLAMDA
AACIGCGACAAACKNGSAMLFVSAKVSQLALLPQGKVEAARRAKAMVAKMDELGFGNCTNTRACEMECPKNISVSNIARL
NREFICAKLQD

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 27444; Mature: 27444

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS00197 2FE2S_FER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKDISVTLKVWRQRGPKEKGQFETYKIEKINQSVSFLEMLDILNEQLVNEGKEPIVFDH
CCCCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
DCREGICGMCSLYVNGHPHGPATGATTCQLYMRRFHDGETITIEPWRSAGFPVIRDLMVD
CHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
RYAYDKIIQAGGFTSVNTGGVPDANAIPIPKKDADLAMDAAACIGCGACAAACKNGSAML
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
FVSAKVSQLALLPQGKVEAARRAKAMVAKMDELGFGNCTNTRACEMECPKNISVSNIARL
EEECCHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHH
NREFICAKLQD
HHHHHEEECCC
>Mature Secondary Structure
MDKDISVTLKVWRQRGPKEKGQFETYKIEKINQSVSFLEMLDILNEQLVNEGKEPIVFDH
CCCCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
DCREGICGMCSLYVNGHPHGPATGATTCQLYMRRFHDGETITIEPWRSAGFPVIRDLMVD
CHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
RYAYDKIIQAGGFTSVNTGGVPDANAIPIPKKDADLAMDAAACIGCGACAAACKNGSAML
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
FVSAKVSQLALLPQGKVEAARRAKAMVAKMDELGFGNCTNTRACEMECPKNISVSNIARL
EEECCHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHH
NREFICAKLQD
HHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]