Click here to switch to the map view.

The map label for this gene is nodB [H]

Identifier: 150009663

GI number: 150009663

Start: 3693455

End: 3694066

Strand: Direct

Name: nodB [H]

Synonym: BDI_3078

Alternate gene names: 150009663

Gene position: 3693455-3694066 (Clockwise)

Preceding gene: 150009662

Following gene: 150009664

Centisome position: 76.76

GC content: 48.04

Gene sequence:

>612_bases
ATGTTTATAGAACAACCGCCTTGGTTTTACAGGGCACTGTTCCCGGGGGTAACTTGGCGAATACCGGCAGAGAAGAAGTG
TGTGTATCTCACCTTCGACGATGGCCCGATTCCCGAGGTTACCCCTTGGGTTTTAGATATATTGGATACGTATGGGATCA
AGGCTACCTTTTTTATGGTAGGGGATAATGTACGTAAGCATCCCGAGGTCTTCCAGATGGTGATAGATCGTGGGCACCGT
GTCGGTAACCATACGTTCAATCATATCCAAGGCATCAAGTTCTGGACGAAGAATTATTTGGCGAATGTGGAGAAGGCGGC
TGAATATATTCCCAGTAATTTATTCCGGCCTCCTCACGGGCATATGCGTTTTCCGCAGGTAGTATGGCTTCGCCGCCATT
ATCATATCGTGATGTGGGACGTGGTCACCCGTGACTATAGCCCTCATATGACTCCGAACGGTGTCTTCAACGTGGTAAAG
AACTATACCCGTAATGGTTCCGTTATCGTCTTCCACGATTCCTTGAAAGCCGAGCGCAATATGCGTGAGGCAATGCCCCG
GGCTGTCGAATGGCTCTTAAAGGAAGGCTACGAGTTTAAAGTTTTTGAATAA

Upstream 100 bases:

>100_bases
TGTAAGCAAACAATACAATCCGGAGTTCGCTAAGCCTTATCAAGAGGAATTTGATAATTACCGTATGGCGTACGGATCAG
TGGCAAAAGACTAACAAAGT

Downstream 100 bases:

>100_bases
TGGGTATCTCCCAGTTTATAAAAGATAAAGCTATGGAATTAGGCTTCTCCGCTTGCGGTATCGCTGAAGTAGCGAAGGCC
GGGAGCGAGGAGGCTTATTT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MFIEQPPWFYRALFPGVTWRIPAEKKCVYLTFDDGPIPEVTPWVLDILDTYGIKATFFMVGDNVRKHPEVFQMVIDRGHR
VGNHTFNHIQGIKFWTKNYLANVEKAAEYIPSNLFRPPHGHMRFPQVVWLRRHYHIVMWDVVTRDYSPHMTPNGVFNVVK
NYTRNGSVIVFHDSLKAERNMREAMPRAVEWLLKEGYEFKVFE

Sequences:

>Translated_203_residues
MFIEQPPWFYRALFPGVTWRIPAEKKCVYLTFDDGPIPEVTPWVLDILDTYGIKATFFMVGDNVRKHPEVFQMVIDRGHR
VGNHTFNHIQGIKFWTKNYLANVEKAAEYIPSNLFRPPHGHMRFPQVVWLRRHYHIVMWDVVTRDYSPHMTPNGVFNVVK
NYTRNGSVIVFHDSLKAERNMREAMPRAVEWLLKEGYEFKVFE
>Mature_203_residues
MFIEQPPWFYRALFPGVTWRIPAEKKCVYLTFDDGPIPEVTPWVLDILDTYGIKATFFMVGDNVRKHPEVFQMVIDRGHR
VGNHTFNHIQGIKFWTKNYLANVEKAAEYIPSNLFRPPHGHMRFPQVVWLRRHYHIVMWDVVTRDYSPHMTPNGVFNVVK
NYTRNGSVIVFHDSLKAERNMREAMPRAVEWLLKEGYEFKVFE

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=166, Percent_Identity=28.3132530120482, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 24112; Mature: 24112

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIEQPPWFYRALFPGVTWRIPAEKKCVYLTFDDGPIPEVTPWVLDILDTYGIKATFFMV
CCCCCCCHHHHHHCCCCEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEE
GDNVRKHPEVFQMVIDRGHRVGNHTFNHIQGIKFWTKNYLANVEKAAEYIPSNLFRPPHG
CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HMRFPQVVWLRRHYHIVMWDVVTRDYSPHMTPNGVFNVVKNYTRNGSVIVFHDSLKAERN
CCCCHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHH
MREAMPRAVEWLLKEGYEFKVFE
HHHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure
MFIEQPPWFYRALFPGVTWRIPAEKKCVYLTFDDGPIPEVTPWVLDILDTYGIKATFFMV
CCCCCCCHHHHHHCCCCEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEE
GDNVRKHPEVFQMVIDRGHRVGNHTFNHIQGIKFWTKNYLANVEKAAEYIPSNLFRPPHG
CCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
HMRFPQVVWLRRHYHIVMWDVVTRDYSPHMTPNGVFNVVKNYTRNGSVIVFHDSLKAERN
CCCCHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHH
MREAMPRAVEWLLKEGYEFKVFE
HHHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6514582 [H]