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The map label for this gene is yabD [H]

Identifier: 150009643

GI number: 150009643

Start: 3659207

End: 3659926

Strand: Direct

Name: yabD [H]

Synonym: BDI_3057

Alternate gene names: 150009643

Gene position: 3659207-3659926 (Clockwise)

Preceding gene: 150009642

Following gene: 150009644

Centisome position: 76.05

GC content: 45.97

Gene sequence:

>720_bases
TTGCGGTTAAACGAATACTTCGTTGCCATCCTTGGGGTGGGAGCGGTTATGATCCGGTTCCGTAACGCCATGGGTTATTA
TGATATACATACGCATCAGATGCCTTTCCATAAGGAGGATATCGCGATTATAAATAGGATCGTGAGTCCAATGGGTGATA
TGCAGCCGGGTTCACTTCCTGATACGGTTATTCGCTCATATGGTATTCATCCGTGGTATATATATAATGTAAAGGAGCAG
ATGGATCTACTTAGGGTATTGGTGTCTGGTTCGGGAGTCGTGGCGATCGGAGAGGCTGGACTTGATACACTGGCCGAATC
TCCAATGGATTTGCAAAAAGAGGTGTTTCTGGCACAAGCCAATTTAGCGGAGGAAACACATAAGCCATTAATCATCCATT
GCGTAAAAGCGTGGGCGGATCTCATTGCCTGTAAAAAGGCCGTGAAACCGGAGATGCCTTGGATTATCCATGGCTTTCGA
GGTAATGGTGAACTTGCCTCCCAATTGGTTCGCTTGGGGTTTTATCTCTCTTTTGGAGATCGTTTTAATCCGTCGGCTTT
GCGTGCCGCATGGCCTGATTTCCTTTTCTTGGAGACCGATGATAAATCGATTGATATCCGCGGGGTCTACCAAAATGTAG
CGGAAGCGTTGGATATTCCGGAAGAAAAGCTGCGGATTCAAATCGCTAAAAACGTTTCTATCTTCCACCTAAACGGATAA

Upstream 100 bases:

>100_bases
ATCTCTCTTATGACACCGGCTTCGTGCAGGTATACGCCCACTTGTTCCGAATATGCGGTGCAAGCCTTGAAGAAATATGG
CCCTGTGAAAGGATTGTATC

Downstream 100 bases:

>100_bases
TTATCAATTATCAATTTTCGATTCTCAATTAAAAAGTCGTACCTTTGCCTCGTATGAGATAAAGTGACAAATATATTAAT
GTAATACGATATAAATTAAT

Product: TatD-related DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MRLNEYFVAILGVGAVMIRFRNAMGYYDIHTHQMPFHKEDIAIINRIVSPMGDMQPGSLPDTVIRSYGIHPWYIYNVKEQ
MDLLRVLVSGSGVVAIGEAGLDTLAESPMDLQKEVFLAQANLAEETHKPLIIHCVKAWADLIACKKAVKPEMPWIIHGFR
GNGELASQLVRLGFYLSFGDRFNPSALRAAWPDFLFLETDDKSIDIRGVYQNVAEALDIPEEKLRIQIAKNVSIFHLNG

Sequences:

>Translated_239_residues
MRLNEYFVAILGVGAVMIRFRNAMGYYDIHTHQMPFHKEDIAIINRIVSPMGDMQPGSLPDTVIRSYGIHPWYIYNVKEQ
MDLLRVLVSGSGVVAIGEAGLDTLAESPMDLQKEVFLAQANLAEETHKPLIIHCVKAWADLIACKKAVKPEMPWIIHGFR
GNGELASQLVRLGFYLSFGDRFNPSALRAAWPDFLFLETDDKSIDIRGVYQNVAEALDIPEEKLRIQIAKNVSIFHLNG
>Mature_239_residues
MRLNEYFVAILGVGAVMIRFRNAMGYYDIHTHQMPFHKEDIAIINRIVSPMGDMQPGSLPDTVIRSYGIHPWYIYNVKEQ
MDLLRVLVSGSGVVAIGEAGLDTLAESPMDLQKEVFLAQANLAEETHKPLIIHCVKAWADLIACKKAVKPEMPWIIHGFR
GNGELASQLVRLGFYLSFGDRFNPSALRAAWPDFLFLETDDKSIDIRGVYQNVAEALDIPEEKLRIQIAKNVSIFHLNG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Escherichia coli, GI1787342, Length=151, Percent_Identity=35.0993377483444, Blast_Score=70, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559024, Length=119, Percent_Identity=34.453781512605, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 26910; Mature: 26910

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLNEYFVAILGVGAVMIRFRNAMGYYDIHTHQMPFHKEDIAIINRIVSPMGDMQPGSLP
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
DTVIRSYGIHPWYIYNVKEQMDLLRVLVSGSGVVAIGEAGLDTLAESPMDLQKEVFLAQA
HHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHH
NLAEETHKPLIIHCVKAWADLIACKKAVKPEMPWIIHGFRGNGELASQLVRLGFYLSFGD
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHEECCC
RFNPSALRAAWPDFLFLETDDKSIDIRGVYQNVAEALDIPEEKLRIQIAKNVSIFHLNG
CCCCHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHCCCHHHEEEEEECCEEEEEECC
>Mature Secondary Structure
MRLNEYFVAILGVGAVMIRFRNAMGYYDIHTHQMPFHKEDIAIINRIVSPMGDMQPGSLP
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
DTVIRSYGIHPWYIYNVKEQMDLLRVLVSGSGVVAIGEAGLDTLAESPMDLQKEVFLAQA
HHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHH
NLAEETHKPLIIHCVKAWADLIACKKAVKPEMPWIIHGFRGNGELASQLVRLGFYLSFGD
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHEECCC
RFNPSALRAAWPDFLFLETDDKSIDIRGVYQNVAEALDIPEEKLRIQIAKNVSIFHLNG
CCCCHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHCCCHHHEEEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]