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The map label for this gene is sigV [H]

Identifier: 150009581

GI number: 150009581

Start: 3583245

End: 3583757

Strand: Direct

Name: sigV [H]

Synonym: BDI_2994

Alternate gene names: 150009581

Gene position: 3583245-3583757 (Clockwise)

Preceding gene: 150009580

Following gene: 150009582

Centisome position: 74.47

GC content: 44.25

Gene sequence:

>513_bases
ATGGACGTTGATGTTTTTAAACAACGGTTCCTACCCTTTCATCCTAAACTCTATCGGATCGCTTATGCCTTATTAGACAA
TAAAGCGGATGCGGAAGACATACTTCAAGATGCCTATTGCAAATTATGGAATAAAAGGGATGAGCTGGGAGATATCCAGA
ATCCGGAAGCATTTTCCATAACATTGGTCAAAAATCTTTGTCTGGATTTCCTGCGCTCGCCCAAAGCAAGCCGAAGAGAC
AACGAAGAGGCATTGGAGACCGTTCTATTAACGACCGACTCCTCGCCGGAAAAGGAATTGGAAGAAAAAGAGGATATCCG
GCGTATACAAGAACTGATAGAACAGCTCCCCGAGAACCAGAGGCAGGTAATCCGCCTGCGTGGTATTGAGGATTGTTCCT
ATGAGGACATTGAACAGATTACAGGGCTTAGCTCCTCTAATATAAGAACATTACTTTCCCGGGCACGCAAATTGATCCGG
GAGAAACTAGAAAAAGCAAGTTGTCATGGATGA

Upstream 100 bases:

>100_bases
GCGACAATGCGTTAATCCGTATCAAAGGAAAGATCAGCCCGTCCGATCTAGACCGGGTAATCAATGAGCACAAAACTGGA
AATCATTAAGGGCGATACTG

Downstream 100 bases:

>100_bases
TAAAAAGATAGATGAACTAATAAACAAGGCACTCCAAGAGGATTTAGCCTTACCGGAGGGACTTTCCGAAAGGCTGGAAC
GACAAATCGACTTCCTAGCC

Product: putative RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MDVDVFKQRFLPFHPKLYRIAYALLDNKADAEDILQDAYCKLWNKRDELGDIQNPEAFSITLVKNLCLDFLRSPKASRRD
NEEALETVLLTTDSSPEKELEEKEDIRRIQELIEQLPENQRQVIRLRGIEDCSYEDIEQITGLSSSNIRTLLSRARKLIR
EKLEKASCHG

Sequences:

>Translated_170_residues
MDVDVFKQRFLPFHPKLYRIAYALLDNKADAEDILQDAYCKLWNKRDELGDIQNPEAFSITLVKNLCLDFLRSPKASRRD
NEEALETVLLTTDSSPEKELEEKEDIRRIQELIEQLPENQRQVIRLRGIEDCSYEDIEQITGLSSSNIRTLLSRARKLIR
EKLEKASCHG
>Mature_170_residues
MDVDVFKQRFLPFHPKLYRIAYALLDNKADAEDILQDAYCKLWNKRDELGDIQNPEAFSITLVKNLCLDFLRSPKASRRD
NEEALETVLLTTDSSPEKELEEKEDIRRIQELIEQLPENQRQVIRLRGIEDCSYEDIEQITGLSSSNIRTLLSRARKLIR
EKLEKASCHG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19836; Mature: 19836

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVDVFKQRFLPFHPKLYRIAYALLDNKADAEDILQDAYCKLWNKRDELGDIQNPEAFSI
CCHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHH
TLVKNLCLDFLRSPKASRRDNEEALETVLLTTDSSPEKELEEKEDIRRIQELIEQLPENQ
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH
RQVIRLRGIEDCSYEDIEQITGLSSSNIRTLLSRARKLIREKLEKASCHG
HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDVDVFKQRFLPFHPKLYRIAYALLDNKADAEDILQDAYCKLWNKRDELGDIQNPEAFSI
CCHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCHHHH
TLVKNLCLDFLRSPKASRRDNEEALETVLLTTDSSPEKELEEKEDIRRIQELIEQLPENQ
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH
RQVIRLRGIEDCSYEDIEQITGLSSSNIRTLLSRARKLIREKLEKASCHG
HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]