Click here to switch to the map view.

The map label for this gene is xylR [H]

Identifier: 150009527

GI number: 150009527

Start: 3515797

End: 3517005

Strand: Direct

Name: xylR [H]

Synonym: BDI_2940

Alternate gene names: 150009527

Gene position: 3515797-3517005 (Clockwise)

Preceding gene: 150009526

Following gene: 150009528

Centisome position: 73.07

GC content: 42.27

Gene sequence:

>1209_bases
ATGACAACTAAGTTCTTGCTCTCGTCCGATGACAATACTCGCAGTGGCCTTCTGAAAAAGAAGATCATACATTATTATAT
GGCCAATGGAGACGCTACTATAGCGGAGGTATGTAAAGAAATGAATCTCAGTATCCCCACCGTCACTAAGCTAATTAGCG
AATTACAAGAGGACGGTTATATACTCGACTTTGGAAAACAAGAGACTAGCGGAGGGCGTAAACCTAGTATTTACGGGCTC
AATCCCATATCCGGCTATTTTGTGGGCGTAGATATACTGAAAGATCAACTGAATCTAGCCATATTAGATTTTAAAGGAGA
TAAGATCCGCATTGAGCAGAATATCCCTTATACACTCGAAAACACACCAGCCGCTTTAGACCATCTTTGCGAATGCATCA
ATGAATTTATAAACTCGTTGCCGATCCCAAGGGAAAAAATATTAAGCATTGGCATTAATATATCCGGACGGGTAAATCCT
TTCGCCGGATATAGCTATAGCATTTTTTACTTTGAGGAGAAGCCCTTGTCTCAAATCCTTGAGGAAAAACTACATATAAA
GATCTATATAGAGAATGACACCCGTTCCATGGCTTACGGCGAATATCTTCAAGGAGTCGTAAAAGGAGAGAAAAATATCC
TATTCATCAATATATCTTGGGGATTAGGTATCGGTATCATCATAGACGGCAAGGTTTATTTCGGGAAATCAGGTTTCTCC
GGAGAATTTGGGCACTTCAGCTTCTTCGAGAATGAGATTCTTTGCCATTGCGGTAAAAAAGGATGCCTCGAGACTGGAGC
TTCCGGTTCTGCCCTATACCGTACCCTCCTTGAGCGGTATAAAGAGGGTAGCAACACCATATTGGCCAGTAAAATCGATG
CCGGGGAATACATCGGGCTCTCTGACTTGATCGACGCCATTCACAAAGAGGATATGCTATCCATTGAGATACTGGAGGAG
ATCGGTTTTAATCTAGGTAAAGGAATAGCCGGATTGATGAACATTTTCAATCCGGAACTGGTCGTACTGGGCGGCCCCTT
GTCGCAGACGGGAGAATATTTAAGCCTACCTATTAAAAGTGCCGTCAGGAAGTACTCTTTGAACTTGGTAACCCGTGATA
CTCAGATCAAAGTATCCAAATTAGGTGAAAGAGCGGGTATATTAGGAGCCTGCCTGCTATCTCGATCTAAAATTCTAGGT
ATGATTTAA

Upstream 100 bases:

>100_bases
AATTAAGATAGCTCCTTATGAAAAAATTTTATTTTATTACGCTTAGTTTTTGAAAAAACTTATTGTACCTTTGCCCTAAT
CACTCAATAAAGGTATAACC

Downstream 100 bases:

>100_bases
TATGTATTTCAAAGGAATTAAATAAAAAATAAATAATTATTTCATTTTCTCGATAAAACACCACTATATTATTAAAATAT
TTTATTTATATTTGCAGCAT

Product: putative xylose repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MTTKFLLSSDDNTRSGLLKKKIIHYYMANGDATIAEVCKEMNLSIPTVTKLISELQEDGYILDFGKQETSGGRKPSIYGL
NPISGYFVGVDILKDQLNLAILDFKGDKIRIEQNIPYTLENTPAALDHLCECINEFINSLPIPREKILSIGINISGRVNP
FAGYSYSIFYFEEKPLSQILEEKLHIKIYIENDTRSMAYGEYLQGVVKGEKNILFINISWGLGIGIIIDGKVYFGKSGFS
GEFGHFSFFENEILCHCGKKGCLETGASGSALYRTLLERYKEGSNTILASKIDAGEYIGLSDLIDAIHKEDMLSIEILEE
IGFNLGKGIAGLMNIFNPELVVLGGPLSQTGEYLSLPIKSAVRKYSLNLVTRDTQIKVSKLGERAGILGACLLSRSKILG
MI

Sequences:

>Translated_402_residues
MTTKFLLSSDDNTRSGLLKKKIIHYYMANGDATIAEVCKEMNLSIPTVTKLISELQEDGYILDFGKQETSGGRKPSIYGL
NPISGYFVGVDILKDQLNLAILDFKGDKIRIEQNIPYTLENTPAALDHLCECINEFINSLPIPREKILSIGINISGRVNP
FAGYSYSIFYFEEKPLSQILEEKLHIKIYIENDTRSMAYGEYLQGVVKGEKNILFINISWGLGIGIIIDGKVYFGKSGFS
GEFGHFSFFENEILCHCGKKGCLETGASGSALYRTLLERYKEGSNTILASKIDAGEYIGLSDLIDAIHKEDMLSIEILEE
IGFNLGKGIAGLMNIFNPELVVLGGPLSQTGEYLSLPIKSAVRKYSLNLVTRDTQIKVSKLGERAGILGACLLSRSKILG
MI
>Mature_401_residues
TTKFLLSSDDNTRSGLLKKKIIHYYMANGDATIAEVCKEMNLSIPTVTKLISELQEDGYILDFGKQETSGGRKPSIYGLN
PISGYFVGVDILKDQLNLAILDFKGDKIRIEQNIPYTLENTPAALDHLCECINEFINSLPIPREKILSIGINISGRVNPF
AGYSYSIFYFEEKPLSQILEEKLHIKIYIENDTRSMAYGEYLQGVVKGEKNILFINISWGLGIGIIIDGKVYFGKSGFSG
EFGHFSFFENEILCHCGKKGCLETGASGSALYRTLLERYKEGSNTILASKIDAGEYIGLSDLIDAIHKEDMLSIEILEEI
GFNLGKGIAGLMNIFNPELVVLGGPLSQTGEYLSLPIKSAVRKYSLNLVTRDTQIKVSKLGERAGILGACLLSRSKILGM
I

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566315, Length=286, Percent_Identity=28.6713286713287, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI298566325, Length=286, Percent_Identity=28.6713286713287, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI190014632, Length=286, Percent_Identity=28.6713286713287, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI4885285, Length=286, Percent_Identity=28.6713286713287, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI1786891, Length=370, Percent_Identity=26.7567567567568, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1787878, Length=368, Percent_Identity=22.8260869565217, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI87081733, Length=259, Percent_Identity=24.3243243243243, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI87082127, Length=363, Percent_Identity=23.6914600550964, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787363, Length=323, Percent_Identity=26.0061919504644, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790522, Length=202, Percent_Identity=25.2475247524752, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 44419; Mature: 44288

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKFLLSSDDNTRSGLLKKKIIHYYMANGDATIAEVCKEMNLSIPTVTKLISELQEDGY
CCCEEEEECCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCE
ILDFGKQETSGGRKPSIYGLNPISGYFVGVDILKDQLNLAILDFKGDKIRIEQNIPYTLE
EEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHCCCCEEEEEECCCEEEEECCCCEEEC
NTPAALDHLCECINEFINSLPIPREKILSIGINISGRVNPFAGYSYSIFYFEEKPLSQIL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCEEEEEEECCCHHHHHH
EEKLHIKIYIENDTRSMAYGEYLQGVVKGEKNILFINISWGLGIGIIIDGKVYFGKSGFS
HCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECEEEECCCCCC
GEFGHFSFFENEILCHCGKKGCLETGASGSALYRTLLERYKEGSNTILASKIDAGEYIGL
CCCCCCCHHCCCHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH
SDLIDAIHKEDMLSIEILEEIGFNLGKGIAGLMNIFNPELVVLGGPLSQTGEYLSLPIKS
HHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCHHCCCCEEECCHHH
AVRKYSLNLVTRDTQIKVSKLGERAGILGACLLSRSKILGMI
HHHHHEEEEEECCCEEEHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTKFLLSSDDNTRSGLLKKKIIHYYMANGDATIAEVCKEMNLSIPTVTKLISELQEDGY
CCEEEEECCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCE
ILDFGKQETSGGRKPSIYGLNPISGYFVGVDILKDQLNLAILDFKGDKIRIEQNIPYTLE
EEECCCCCCCCCCCCCEEECCCCCCEEEEHHHHHCCCCEEEEEECCCEEEEECCCCEEEC
NTPAALDHLCECINEFINSLPIPREKILSIGINISGRVNPFAGYSYSIFYFEEKPLSQIL
CCCHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCCCCCCCCCEEEEEEECCCHHHHHH
EEKLHIKIYIENDTRSMAYGEYLQGVVKGEKNILFINISWGLGIGIIIDGKVYFGKSGFS
HCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECEEEECCCCCC
GEFGHFSFFENEILCHCGKKGCLETGASGSALYRTLLERYKEGSNTILASKIDAGEYIGL
CCCCCCCHHCCCHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCH
SDLIDAIHKEDMLSIEILEEIGFNLGKGIAGLMNIFNPELVVLGGPLSQTGEYLSLPIKS
HHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCHHCCCCEEECCHHH
AVRKYSLNLVTRDTQIKVSKLGERAGILGACLLSRSKILGMI
HHHHHEEEEEECCCEEEHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]