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The map label for this gene is ruvB

Identifier: 150009504

GI number: 150009504

Start: 3487592

End: 3488617

Strand: Reverse

Name: ruvB

Synonym: BDI_2917

Alternate gene names: 150009504

Gene position: 3488617-3487592 (Counterclockwise)

Preceding gene: 150009542

Following gene: 150009503

Centisome position: 72.51

GC content: 52.63

Gene sequence:

>1026_bases
ATGGAAGATGATTTTGATATAAGGGATGCCCGGATGCCGGAAAACGAGCGAGAGTACGAGAACGTGCTTCGGCCGCTTTC
GCTCCGTGACTTCAGCGGGCAGGCGAAGGTGGTGGAGAACCTGAAGGTGTTCGTCATGGCTGCCCGCATGCGTAAGGAGG
CGCTGGATCATGTGCTTTTGCATGGGCCTCCCGGGTTGGGAAAGACGACGTTGTCGAATATTATAGCGAACGAGTTGGGG
GTTGGTTTCAAGGTCACGTCGGGGCCGGTGCTGGATAAGCCGGGAGATCTGGCCGGGGTATTGACCTCGCTGGAGAAGAA
CGACGTGCTTTTTATCGATGAGATTCACCGGTTGAGCCCGATCGTGGAGGAATACCTGTATTCCGCTATGGAGGATTACC
GGATCGATATCGTGATCGATAAAGGACCAAGCGCTCGCTCGATACAGATCGATTTGGCTCCGTTTACATTGATTGGCGCT
ACGACCCGTAGCGGCTTGCTGACTAGTCCGCTGCGTGCCCGTTTCGGTATCAATATGCACTTGGAGTATTATGATATGGA
GACGCTGACGAAGATCGTGCTCCGTAGTGCTAATATTTTGAATGTAAAATGTGAGTTGAACGCCGCTAGGGAGATCGCTT
CCCGTAGCCGGGGTACGCCTCGTATCGCCAACGCTTTATTGCGCCGTGTGCGTGATTTCGCTCAAGTGAAGGGGAACGGA
GATATCGATAAGGCGATCGCTTGCTTCTCTTTGGAGGCGTTGAATATAGATCGGTATGGCTTGGATCAGATCGATAATAA
GTTGCTGACGACGATCATTGATAAATTCAAGGGAGGCCCGGTCGGATTAACGACGATCGCCACGGCTTTGGGCGAGGACC
CCGGAACGCTAGAAGAAGTGTACGAGCCTTTCTTGATCAAAGAGGGCTTTATCAAACGCACGCCCCGTGGCCGTGAGGTC
ACCGATTTAGCTTATACCCATCTGGGACGTAGCCGGGTGGGGGAACAAGGTTTTTTATTTGATTAG

Upstream 100 bases:

>100_bases
GCAAACATATGCTTTTCTCACTGTCAGAAAAATATTTTATACATCTTATTTTCGTGAATGTGTTGTTTAACATTATCTTT
GCAAGTCAATGAACGTGAAT

Downstream 100 bases:

>100_bases
ACAGATAGATATGGCAGGAGGAATGAAGCGGCTCGCTAAAGAGACAGCCGTTTATGGATTGAGTAGTATAGTGGGGCGTT
TCCTGAATTGGATGTTGGTA

Product: Holliday junction DNA helicase RuvB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG
VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGA
TTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG
DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV
TDLAYTHLGRSRVGEQGFLFD

Sequences:

>Translated_341_residues
MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG
VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGA
TTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG
DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV
TDLAYTHLGRSRVGEQGFLFD
>Mature_341_residues
MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLLHGPPGLGKTTLSNIIANELG
VGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSPIVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGA
TTRSGLLTSPLRARFGINMHLEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG
DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEVYEPFLIKEGFIKRTPRGREV
TDLAYTHLGRSRVGEQGFLFD

Specific function: The ruvA-ruvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is an helicase that mediates the Holliday

COG id: COG2255

COG function: function code L; Holliday junction resolvasome, helicase subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ruvB family

Homologues:

Organism=Escherichia coli, GI1788167, Length=310, Percent_Identity=58.7096774193548, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVB_PARD8 (A6LG11)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001304247.1
- ProteinModelPortal:   A6LG11
- SMR:   A6LG11
- STRING:   A6LG11
- GeneID:   5308066
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_2917
- eggNOG:   COG2255
- HOGENOM:   HBG339960
- OMA:   EKFDGGP
- ProtClustDB:   PRK00080
- BioCyc:   PDIS435591:BDI_2917-MONOMER
- HAMAP:   MF_00016
- InterPro:   IPR003593
- InterPro:   IPR004605
- InterPro:   IPR008823
- InterPro:   IPR008824
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- ProDom:   PD005323
- SMART:   SM00382
- TIGRFAMs:   TIGR00635

Pfam domain/function: PF05491 RuvB_C; PF05496 RuvB_N

EC number: =3.6.4.12

Molecular weight: Translated: 37950; Mature: 37950

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLL
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEE
HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP
CCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHH
IVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMH
HHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCCCHHHHCCCEEE
LEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG
EEEECHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEV
CHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHH
YEPFLIKEGFIKRTPRGREVTDLAYTHLGRSRVGEQGFLFD
HHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEDDFDIRDARMPENEREYENVLRPLSLRDFSGQAKVVENLKVFVMAARMRKEALDHVLL
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEE
HGPPGLGKTTLSNIIANELGVGFKVTSGPVLDKPGDLAGVLTSLEKNDVLFIDEIHRLSP
CCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHH
IVEEYLYSAMEDYRIDIVIDKGPSARSIQIDLAPFTLIGATTRSGLLTSPLRARFGINMH
HHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCEEEEECCCCCCCCCCCHHHHCCCEEE
LEYYDMETLTKIVLRSANILNVKCELNAAREIASRSRGTPRIANALLRRVRDFAQVKGNG
EEEECHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
DIDKAIACFSLEALNIDRYGLDQIDNKLLTTIIDKFKGGPVGLTTIATALGEDPGTLEEV
CHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHH
YEPFLIKEGFIKRTPRGREVTDLAYTHLGRSRVGEQGFLFD
HHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA