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The map label for this gene is ygdL [H]

Identifier: 150009468

GI number: 150009468

Start: 3433399

End: 3434115

Strand: Direct

Name: ygdL [H]

Synonym: BDI_2881

Alternate gene names: 150009468

Gene position: 3433399-3434115 (Clockwise)

Preceding gene: 150009467

Following gene: 150009469

Centisome position: 71.36

GC content: 53.0

Gene sequence:

>717_bases
ATGAGTTACAATTGGAATACACGGACGGAACTTTTGTTCGGAGCGGAGCGTATGGAGCGCTTATCCCGTAGCCATGTATT
GGTAGTTGGCCTAGGAGGTGTGGGAGCTTATGCCGCCGAGCAGATTTGTCGGGCCGGAGTAGGAAAGATGACGATCATAG
ACGCCGATACGGTAAACGAGAGTAATATCAACCGCCAATTGCCCGCCCTTCATTCCACCCTAGGGATGCCGAAAGCCGAG
GTCGTGGCCAAGCGTTTGCTCGATATCAATCCCCAGTTGCAACTAACCGTCCTGAATGAATTCCTGCGAGACGAGCGGAC
GGAGGAGGTACTCCTATCGGCCCCTCTCGATTTCGTGGTAGATGCCATCGATTCCCTAAGTCCCAAGGTATACCTGATGT
ACCAAGCATATATCCATAAGATCCCCATCGTGTCCTCCATGGGGGCGGGCGCTAAGGTAGACCCGTCCTTGGTACGGATT
GCGGATATCTCCAAGACAACCAATTGCGCCCTAGCGAAAGCGGTGCGGAAACGGTTGCGTCCTCTAGGCGTAAGCAAGGG
GATTCCCGTCGTATTTTCCACCGAGTTCGCCGATCCGGACGCCGTGATCGAAGTTGAAAACGAAACATGTAAACGTACGA
CCACGGGAACGGTCTCTTATATGCCGGCAACGTTCGGTTGTTTCCTTGCCTCGCACGTTCTAAGAAACTTGATATGA

Upstream 100 bases:

>100_bases
CTGCAACGCCCGTGCAGTAACAAGACACAAAGCTTTCGGATAAAAGCAAGTATTGGAGGAACCGGAACAATTGATTACTT
TTGTGCTCAAAAATAGATAA

Downstream 100 bases:

>100_bases
TACAAACCGAAGGAATAACGAAAAGTTTCGGAGCCTTACAAGTATTGAAAGGCATCGACCTCACGATAAACAAGGGCGAG
GTTGTCGCTATCGTAGGCCC

Product: ThiF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSYNWNTRTELLFGAERMERLSRSHVLVVGLGGVGAYAAEQICRAGVGKMTIIDADTVNESNINRQLPALHSTLGMPKAE
VVAKRLLDINPQLQLTVLNEFLRDERTEEVLLSAPLDFVVDAIDSLSPKVYLMYQAYIHKIPIVSSMGAGAKVDPSLVRI
ADISKTTNCALAKAVRKRLRPLGVSKGIPVVFSTEFADPDAVIEVENETCKRTTTGTVSYMPATFGCFLASHVLRNLI

Sequences:

>Translated_238_residues
MSYNWNTRTELLFGAERMERLSRSHVLVVGLGGVGAYAAEQICRAGVGKMTIIDADTVNESNINRQLPALHSTLGMPKAE
VVAKRLLDINPQLQLTVLNEFLRDERTEEVLLSAPLDFVVDAIDSLSPKVYLMYQAYIHKIPIVSSMGAGAKVDPSLVRI
ADISKTTNCALAKAVRKRLRPLGVSKGIPVVFSTEFADPDAVIEVENETCKRTTTGTVSYMPATFGCFLASHVLRNLI
>Mature_237_residues
SYNWNTRTELLFGAERMERLSRSHVLVVGLGGVGAYAAEQICRAGVGKMTIIDADTVNESNINRQLPALHSTLGMPKAEV
VAKRLLDINPQLQLTVLNEFLRDERTEEVLLSAPLDFVVDAIDSLSPKVYLMYQAYIHKIPIVSSMGAGAKVDPSLVRIA
DISKTTNCALAKAVRKRLRPLGVSKGIPVVFSTEFADPDAVIEVENETCKRTTTGTVSYMPATFGCFLASHVLRNLI

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=258, Percent_Identity=35.6589147286822, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1787048, Length=134, Percent_Identity=38.0597014925373, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082356, Length=137, Percent_Identity=32.1167883211679, Blast_Score=75, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193203301, Length=135, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322825, Length=243, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6321790, Length=241, Percent_Identity=30.2904564315353, Blast_Score=121, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6322639, Length=150, Percent_Identity=26, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24582879, Length=146, Percent_Identity=33.5616438356164, Blast_Score=74, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 26049; Mature: 25917

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYNWNTRTELLFGAERMERLSRSHVLVVGLGGVGAYAAEQICRAGVGKMTIIDADTVNE
CCCCCCCHHHHHCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCC
SNINRQLPALHSTLGMPKAEVVAKRLLDINPQLQLTVLNEFLRDERTEEVLLSAPLDFVV
CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHHCCHHHHH
DAIDSLSPKVYLMYQAYIHKIPIVSSMGAGAKVDPSLVRIADISKTTNCALAKAVRKRLR
HHHHHCCCCEEEEEHHHHHHCCCHHCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHC
PLGVSKGIPVVFSTEFADPDAVIEVENETCKRTTTGTVSYMPATFGCFLASHVLRNLI
CCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SYNWNTRTELLFGAERMERLSRSHVLVVGLGGVGAYAAEQICRAGVGKMTIIDADTVNE
CCCCCCHHHHHCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCC
SNINRQLPALHSTLGMPKAEVVAKRLLDINPQLQLTVLNEFLRDERTEEVLLSAPLDFVV
CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHHCCHHHHH
DAIDSLSPKVYLMYQAYIHKIPIVSSMGAGAKVDPSLVRIADISKTTNCALAKAVRKRLR
HHHHHCCCCEEEEEHHHHHHCCCHHCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHHHC
PLGVSKGIPVVFSTEFADPDAVIEVENETCKRTTTGTVSYMPATFGCFLASHVLRNLI
CCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]