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The map label for this gene is glaB

Identifier: 150009425

GI number: 150009425

Start: 3378968

End: 3380806

Strand: Reverse

Name: glaB

Synonym: BDI_2833

Alternate gene names: 150009425

Gene position: 3380806-3378968 (Counterclockwise)

Preceding gene: 150009426

Following gene: 150009424

Centisome position: 70.27

GC content: 49.32

Gene sequence:

>1839_bases
ATGAAATGGTATCTATGGGGGGCAGTTGTCCTGCTTTATTCCCTGTTTGGAAGCGCTTGTTCTACGGAATGGAGGTATGA
TTTGTCGGCTTATGGTTTATCCCCGGTCGAGAATGTGGATAATGCGCCCGCTATGGCGAGGGCATTGGAGCAGATACGGG
AGAAATGCGAGGAAAACCAGACAATTGTGGTGACCTTGCCTAAGGGCCGCTATGAGTTTTATCCCGATAGCGCGGCGGAG
CGTGTCTATTTCATCTCGAATCATGATCAAATGAATCCGAAGAAAGTAGGCTTGCCTTTCGAGGGGATGAAGAATATGGT
GTTCGACGGGCAAGGTTCGGAGTTAATCTTCCACGGCAGGATGTTGCCGGTCTCTTTGCTGGATTCGAGGAATTGTGTCT
TGAAAAACTTTAGTATAGACTTCAAGCACCCTCAGATTTCACAGGTAAAAGTGGTGGAGAACGATACGGTGAATGGTGGG
ATCACTTTCGAGGTGGCTCCGTGGGTACACTATGAGATACGGGATAGCGTGTTTGTAGCGAAGGGAGAAGGCTGGGAGTT
GACTCCCGGTTCCGGTATCGCCTTCGAGGGAGATACACGTCATTTGGTGTATAATACAAGCGATATCCCGGTAGGCGTGC
GGGGCTTGATCGAGGTTTCTCCAAGGCTGATAAAGTCTCCCCGTTGGAAAGACAACCGTTTGGTGCCCGGTACGGTGATC
GCCATGCGTTCTTGGGAACGCCCGGCTCCCGGTGTCTTCCTGTATCATGACGTGAATACGACTCTGGAGAATATCAAGGT
TCATTATGCCGAGGGAATGGGCCTCTTGGCGCAAATGAGCGAGAATATCACGCTGGATGGTTTCTCCGTTTGCTTGAAAG
GGGCGGACGATCCGCGGTATTTCACGACACAGGCGGACGCTACCCATTTCTCGGCCTGCAAGGGAGCGATCATCTCCAAG
AATGGTTTGTACGAAGGGATGATGGACGACGCTATCAATGTGCATGGAACTTACCTGAAAGTGGTGAGACGAGTGAATGA
CTCTACCTTGGTAGGCCGGTATATGCACCCGCAATCGTATGGTTTCGAATGGGGAAGGGTAGGGGATTCCGTGCAGTTCA
TCCATTCGAGCACCATGGAATTGATAGGGGCGAGAAACCGGATTACCGCTATCAAGGCGGTAGATCAACCGGATTACCGA
GGGGCGAAGGAGTTCGAGATCCGGTTTGAGAATACGGTGAATCCTTCGATCCATGAGGGAAGCGGTTTCGGCATAGAGAA
TCTGGAGTGGACACCGACGGTCCTATTCTCGGATAACTTAATCCGTAATAACCGTGCCCGCGGTTCCTTGTTCAGCACGC
CTCGGCAAACGGTCGTAGAGAATAATGTTTTCGATCATACCTCGGGGACGGCGATCCTGCTGTGCGGTGATTGCAACGGC
TGGTTCGAGACCGGCGCTTGCCGGAACGTGTTGATCCGTAAGAATAAGTTCATCAACTCCTTGACGAATATGTTCCAATT
TACGAACGCTATTATCTCTATTTATCCCGAAATCCCGGATTTAGCGTCGCAAAGGAAATATTTCCATAGTGATATCGTGA
TCGACGCGAATGAGTTTATCACGTTCGACAGACCTTTGGTATACGCCAAGTCCGTGGACGGGTTGGTGTTCACGAATAAT
ATTGTCAAACAAAATAAGGAATATCCGGCTTTTCATTGGAATAACTATCGTTTCTATTTCCAGCGGGTGATCCACTCGAA
AATAGAGAACAACTATTTTGATGAAGGGTTTATCCGGGAGAGGGATGTCTTAGAGGAAAATAACGGATATGATATATAG

Upstream 100 bases:

>100_bases
GATTCGTGATAGGATTCATGAGACGGAAAGTTGTTGTCTGTTTTTAGTGCGCTTACCCTGTAAAATACATACCTTCGCGG
ATATATTTAATTGATTTTCT

Downstream 100 bases:

>100_bases
GAAATTAATCGTCTTGGTAAGCCTTTTGATAGGCTTCGTAAACATTGCGTTCGCCGGCGTTGGTGATCTCGATACGTTAA
ACGTACGTTCTCAAGCCCCT

Product: ATP/GTP-binding site

Products: NA

Alternate protein names: Exo-alpha-galactosidase B

Number of amino acids: Translated: 612; Mature: 612

Protein sequence:

>612_residues
MKWYLWGAVVLLYSLFGSACSTEWRYDLSAYGLSPVENVDNAPAMARALEQIREKCEENQTIVVTLPKGRYEFYPDSAAE
RVYFISNHDQMNPKKVGLPFEGMKNMVFDGQGSELIFHGRMLPVSLLDSRNCVLKNFSIDFKHPQISQVKVVENDTVNGG
ITFEVAPWVHYEIRDSVFVAKGEGWELTPGSGIAFEGDTRHLVYNTSDIPVGVRGLIEVSPRLIKSPRWKDNRLVPGTVI
AMRSWERPAPGVFLYHDVNTTLENIKVHYAEGMGLLAQMSENITLDGFSVCLKGADDPRYFTTQADATHFSACKGAIISK
NGLYEGMMDDAINVHGTYLKVVRRVNDSTLVGRYMHPQSYGFEWGRVGDSVQFIHSSTMELIGARNRITAIKAVDQPDYR
GAKEFEIRFENTVNPSIHEGSGFGIENLEWTPTVLFSDNLIRNNRARGSLFSTPRQTVVENNVFDHTSGTAILLCGDCNG
WFETGACRNVLIRKNKFINSLTNMFQFTNAIISIYPEIPDLASQRKYFHSDIVIDANEFITFDRPLVYAKSVDGLVFTNN
IVKQNKEYPAFHWNNYRFYFQRVIHSKIENNYFDEGFIRERDVLEENNGYDI

Sequences:

>Translated_612_residues
MKWYLWGAVVLLYSLFGSACSTEWRYDLSAYGLSPVENVDNAPAMARALEQIREKCEENQTIVVTLPKGRYEFYPDSAAE
RVYFISNHDQMNPKKVGLPFEGMKNMVFDGQGSELIFHGRMLPVSLLDSRNCVLKNFSIDFKHPQISQVKVVENDTVNGG
ITFEVAPWVHYEIRDSVFVAKGEGWELTPGSGIAFEGDTRHLVYNTSDIPVGVRGLIEVSPRLIKSPRWKDNRLVPGTVI
AMRSWERPAPGVFLYHDVNTTLENIKVHYAEGMGLLAQMSENITLDGFSVCLKGADDPRYFTTQADATHFSACKGAIISK
NGLYEGMMDDAINVHGTYLKVVRRVNDSTLVGRYMHPQSYGFEWGRVGDSVQFIHSSTMELIGARNRITAIKAVDQPDYR
GAKEFEIRFENTVNPSIHEGSGFGIENLEWTPTVLFSDNLIRNNRARGSLFSTPRQTVVENNVFDHTSGTAILLCGDCNG
WFETGACRNVLIRKNKFINSLTNMFQFTNAIISIYPEIPDLASQRKYFHSDIVIDANEFITFDRPLVYAKSVDGLVFTNN
IVKQNKEYPAFHWNNYRFYFQRVIHSKIENNYFDEGFIRERDVLEENNGYDI
>Mature_612_residues
MKWYLWGAVVLLYSLFGSACSTEWRYDLSAYGLSPVENVDNAPAMARALEQIREKCEENQTIVVTLPKGRYEFYPDSAAE
RVYFISNHDQMNPKKVGLPFEGMKNMVFDGQGSELIFHGRMLPVSLLDSRNCVLKNFSIDFKHPQISQVKVVENDTVNGG
ITFEVAPWVHYEIRDSVFVAKGEGWELTPGSGIAFEGDTRHLVYNTSDIPVGVRGLIEVSPRLIKSPRWKDNRLVPGTVI
AMRSWERPAPGVFLYHDVNTTLENIKVHYAEGMGLLAQMSENITLDGFSVCLKGADDPRYFTTQADATHFSACKGAIISK
NGLYEGMMDDAINVHGTYLKVVRRVNDSTLVGRYMHPQSYGFEWGRVGDSVQFIHSSTMELIGARNRITAIKAVDQPDYR
GAKEFEIRFENTVNPSIHEGSGFGIENLEWTPTVLFSDNLIRNNRARGSLFSTPRQTVVENNVFDHTSGTAILLCGDCNG
WFETGACRNVLIRKNKFINSLTNMFQFTNAIISIYPEIPDLASQRKYFHSDIVIDANEFITFDRPLVYAKSVDGLVFTNN
IVKQNKEYPAFHWNNYRFYFQRVIHSKIENNYFDEGFIRERDVLEENNGYDI

Specific function: Alpha-galactosidase. Removes both branched alpha-1,3- linked galactose residues of blood group B antigens and linear alpha-1,3-linked galactose structures

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 PbH1 repeats

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLAB_PARD8 (A6LFT2)

Other databases:

- EMBL:   CP000140
- RefSeq:   YP_001304168.1
- STRING:   A6LFT2
- GeneID:   5307982
- GenomeReviews:   CP000140_GR
- KEGG:   pdi:BDI_2833
- eggNOG:   NOG77539
- HOGENOM:   HBG345842
- OMA:   LTWTPEV
- ProtClustDB:   CLSK823424
- BioCyc:   PDIS435591:BDI_2833-MONOMER
- InterPro:   IPR012334
- InterPro:   IPR011050
- Gene3D:   G3DSA:2.160.20.10

Pfam domain/function: SSF51126 Pectin_lyas_like

EC number: =3.2.1.22

Molecular weight: Translated: 69565; Mature: 69565

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWYLWGAVVLLYSLFGSACSTEWRYDLSAYGLSPVENVDNAPAMARALEQIREKCEENQ
CEEEHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHCCC
TIVVTLPKGRYEFYPDSAAERVYFISNHDQMNPKKVGLPFEGMKNMVFDGQGSELIFHGR
EEEEEECCCCEEECCCCCCCEEEEEECCCCCCCCEECCCHHHCCCCEECCCCCEEEEECC
MLPVSLLDSRNCVLKNFSIDFKHPQISQVKVVENDTVNGGITFEVAPWVHYEIRDSVFVA
CCEEEECCCCCEEEEECEEECCCCCCCEEEEEECCCCCCCEEEEECCEEEEEECCCEEEE
KGEGWELTPGSGIAFEGDTRHLVYNTSDIPVGVRGLIEVSPRLIKSPRWKDNRLVPGTVI
ECCCEEECCCCCEEECCCCCEEEEECCCCCCCCHHHHHCCHHHHCCCCCCCCEECCCEEE
AMRSWERPAPGVFLYHDVNTTLENIKVHYAEGMGLLAQMSENITLDGFSVCLKGADDPRY
EEECCCCCCCCEEEEEECCCCHHHEEEEEECCCCHHHHHCCCCEECCHHHEEECCCCCCE
FTTQADATHFSACKGAIISKNGLYEGMMDDAINVHGTYLKVVRRVNDSTLVGRYMHPQSY
EEECCCCCHHHHHCCCEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCCEEEEEEECCCCC
GFEWGRVGDSVQFIHSSTMELIGARNRITAIKAVDQPDYRGAKEFEIRFENTVNPSIHEG
CCCHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
SGFGIENLEWTPTVLFSDNLIRNNRARGSLFSTPRQTVVENNVFDHTSGTAILLCGDCNG
CCCCCCCCCCCEEEEEECCHHHCCCCCCCCCCCCCHHHHCCCCEECCCCCEEEEEECCCC
WFETGACRNVLIRKNKFINSLTNMFQFTNAIISIYPEIPDLASQRKYFHSDIVIDANEFI
CCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCEEEECCCEE
TFDRPLVYAKSVDGLVFTNNIVKQNKEYPAFHWNNYRFYFQRVIHSKIENNYFDEGFIRE
EECCCEEEEECCCCEEEECHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCC
RDVLEENNGYDI
HHHHCCCCCCCC
>Mature Secondary Structure
MKWYLWGAVVLLYSLFGSACSTEWRYDLSAYGLSPVENVDNAPAMARALEQIREKCEENQ
CEEEHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHCCC
TIVVTLPKGRYEFYPDSAAERVYFISNHDQMNPKKVGLPFEGMKNMVFDGQGSELIFHGR
EEEEEECCCCEEECCCCCCCEEEEEECCCCCCCCEECCCHHHCCCCEECCCCCEEEEECC
MLPVSLLDSRNCVLKNFSIDFKHPQISQVKVVENDTVNGGITFEVAPWVHYEIRDSVFVA
CCEEEECCCCCEEEEECEEECCCCCCCEEEEEECCCCCCCEEEEECCEEEEEECCCEEEE
KGEGWELTPGSGIAFEGDTRHLVYNTSDIPVGVRGLIEVSPRLIKSPRWKDNRLVPGTVI
ECCCEEECCCCCEEECCCCCEEEEECCCCCCCCHHHHHCCHHHHCCCCCCCCEECCCEEE
AMRSWERPAPGVFLYHDVNTTLENIKVHYAEGMGLLAQMSENITLDGFSVCLKGADDPRY
EEECCCCCCCCEEEEEECCCCHHHEEEEEECCCCHHHHHCCCCEECCHHHEEECCCCCCE
FTTQADATHFSACKGAIISKNGLYEGMMDDAINVHGTYLKVVRRVNDSTLVGRYMHPQSY
EEECCCCCHHHHHCCCEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCCEEEEEEECCCCC
GFEWGRVGDSVQFIHSSTMELIGARNRITAIKAVDQPDYRGAKEFEIRFENTVNPSIHEG
CCCHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCC
SGFGIENLEWTPTVLFSDNLIRNNRARGSLFSTPRQTVVENNVFDHTSGTAILLCGDCNG
CCCCCCCCCCCEEEEEECCHHHCCCCCCCCCCCCCHHHHCCCCEECCCCCEEEEEECCCC
WFETGACRNVLIRKNKFINSLTNMFQFTNAIISIYPEIPDLASQRKYFHSDIVIDANEFI
CCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCEEEECCCEE
TFDRPLVYAKSVDGLVFTNNIVKQNKEYPAFHWNNYRFYFQRVIHSKIENNYFDEGFIRE
EECCCEEEEECCCCEEEECHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCC
RDVLEENNGYDI
HHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA