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The map label for this gene is rnhA [H]

Identifier: 150009406

GI number: 150009406

Start: 3357319

End: 3357954

Strand: Direct

Name: rnhA [H]

Synonym: BDI_2814

Alternate gene names: 150009406

Gene position: 3357319-3357954 (Clockwise)

Preceding gene: 150009405

Following gene: 150009407

Centisome position: 69.78

GC content: 54.09

Gene sequence:

>636_bases
ATGGCCAAGAATAAGTTTTATGTCGTATGGAAAGGGTTGAACCCGGGAATCTATGATAACTGGGCGGAATGCAAGGCACA
GGTAGACGGACAAGAGGGAGCCAAATATAAATCCTTCGAGAACCGGGAGGAAGCCGCCAAAGCCTTCGAGGCCGGCTATA
CCCATTACCTAAAGACCGCCTCTTCCCCGAAAGCCGTGGCCCGTCTCGCGCCAGAAGCCCCGATCGGGAACCCCATCAAT
GAGAGTCTTGCCGTAGACGCCGCCTGTAGCGGTAATCCCGGGGATATGGAGTACAGAGGCGTTTATACCGCCACCGGGCA
AGAGATCTTCCATATCGGCCCGCTGAAGGAGGGCACGAACAATGTCGGGGAATTCCTCGCCTTAGTACACGGCCTCGCCT
TGCTACAGCAAAAGGGAAGCGACCTGCCGATCTATTCGGATAGCCGCAACGCCATCAGCTGGGTCAAGAAAAAGAAATGC
AAAACCCTATTAGCACGTAAACCGATCAACGAACCTATCTTCGACCTCATCGAGCGGGCCGAGAAATGGTTGAACACCCA
TACCTATACCACCCGGATCCTCAAATGGGAAACATCCGAATGGGGGGAGATCCCGGCGGATTTCGGAAGGAAATGA

Upstream 100 bases:

>100_bases
ATGGAAAGAAGGCTGGACGCCTTGATCCGTTTCTTCAAGGATAAAAGAGCGCCGTTCGGTACCTATACGCAATTCTCACA
AGAAATCTTGAGTAAGAGTC

Downstream 100 bases:

>100_bases
GGTAAAGGTAATTAAAATTATATCGTATATTTGCCCAATATATCGAATTCAAGCCTATGAAGATCGCTTTCGACGCAAAA
CGGATTACGCATAACGCTAC

Product: ribonuclease H-like protein

Products: NA

Alternate protein names: RNase H [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MAKNKFYVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAVARLAPEAPIGNPIN
ESLAVDAACSGNPGDMEYRGVYTATGQEIFHIGPLKEGTNNVGEFLALVHGLALLQQKGSDLPIYSDSRNAISWVKKKKC
KTLLARKPINEPIFDLIERAEKWLNTHTYTTRILKWETSEWGEIPADFGRK

Sequences:

>Translated_211_residues
MAKNKFYVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAVARLAPEAPIGNPIN
ESLAVDAACSGNPGDMEYRGVYTATGQEIFHIGPLKEGTNNVGEFLALVHGLALLQQKGSDLPIYSDSRNAISWVKKKKC
KTLLARKPINEPIFDLIERAEKWLNTHTYTTRILKWETSEWGEIPADFGRK
>Mature_210_residues
AKNKFYVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTASSPKAVARLAPEAPIGNPINE
SLAVDAACSGNPGDMEYRGVYTATGQEIFHIGPLKEGTNNVGEFLALVHGLALLQQKGSDLPIYSDSRNAISWVKKKKCK
TLLARKPINEPIFDLIERAEKWLNTHTYTTRILKWETSEWGEIPADFGRK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG3341

COG function: function code R; Predicted double-stranded RNA/RNA-DNA hybrid binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009027
- InterPro:   IPR017290
- InterPro:   IPR011320
- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF01693 Cauli_VI; PF00075 RnaseH [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 23539; Mature: 23408

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNKFYVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTA
CCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
SSPKAVARLAPEAPIGNPINESLAVDAACSGNPGDMEYRGVYTATGQEIFHIGPLKEGTN
CCHHHHHHHCCCCCCCCCCCCHHEEECCCCCCCCCEEECEEEEECCCEEEEECCCCCCCH
NVGEFLALVHGLALLQQKGSDLPIYSDSRNAISWVKKKKCKTLLARKPINEPIFDLIERA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EKWLNTHTYTTRILKWETSEWGEIPADFGRK
HHHHHCCHHEEEEEEECCCCCCCCCHHCCCC
>Mature Secondary Structure 
AKNKFYVVWKGLNPGIYDNWAECKAQVDGQEGAKYKSFENREEAAKAFEAGYTHYLKTA
CCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
SSPKAVARLAPEAPIGNPINESLAVDAACSGNPGDMEYRGVYTATGQEIFHIGPLKEGTN
CCHHHHHHHCCCCCCCCCCCCHHEEECCCCCCCCCEEECEEEEECCCEEEEECCCCCCCH
NVGEFLALVHGLALLQQKGSDLPIYSDSRNAISWVKKKKCKTLLARKPINEPIFDLIERA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
EKWLNTHTYTTRILKWETSEWGEIPADFGRK
HHHHHCCHHEEEEEEECCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]